Transcript Information: S_Transcript_16196.p1


Annotated TAIR IDAT4G37930.1
Annotated Gene Nameserine transhydroxymethyltransferase 1
Annotated Gene Symbol(s)SHM1, STM, SHMT1
Annotation TypeOrtholog
Chromosome Positionchr4:17831891-17834742 | Reverse length=517
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1966.561555499
Replicate 21244.6912631026
Replicate 31369.4712538674
Condition 2: 8 Hour
Replicate 11235.8826783016
Replicate 21201.8053235418
Replicate 31184.3695131541
Condition 3: 24 Hour
Replicate 11611.7045181145
Replicate 21407.918058796
Replicate 31464.7812055389


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_16196.p1 GENE.S_Transcript_16196~~S_Transcript_16196.p1 ORF type:complete len:517 (+),score=122.37,SHMT|PF00464.15|1.8e-211 S_Transcript_16196:263-1813(+)
ATGGCGATGGCAACCACCCTTCGCAAGCTCTCCAATTCCGTCAACAAACCTATTCGCAGCGCCTTCAATGGCGGTCCTCTCTACTATATGTCGTCCTTGCCAAATGAAGCTGTATACGAAAAGGAGAAACGCGTTTCATGGCCGAAACAATTGAACGCTCCGCTGGAAGCCGTTGATCCTGAAATCGCCGACATTATCGAGCATGAAAAGGCCAGACAGTGGAAGGGTCTGGAACTTATTCCATCAGAGAATTTCACTTCAGTCTCTGTGATGCAAGCTGTTGGGTCTGTCATGACCAACAAATACAGTGAAGGATATCCTGGAGCTAGATACTATGGAGGGAATGAATTCATTGATATGGCTGAAACCTTATGCCAAAAGCGTGCATTGGAAGCATTTCGATTGGACCCTGAAAAATGGGGAGTGAATGTCCAACCTCTTTCTGGATCACCAGCAAACTTCCAAGTTTACACTGCTCTTTTAAAGCCTCATGATAGAATCATGGCACTTGATCTTCCACATGGTGGACATCTGTCTCATGGATACCAGACCGATACCAAGAAGATATCAGCTGTATCTATCTTTTTCGAGACAATGCCATACAGATTGAATGAAAGCACTGGTTACATTGATTATGATCAGTTGGAGAAAAGTGCCTCACTATTCCGACCAAAACTGATAGTTGCTGGAGCTAGTGCCTATGCAAGACTGTATGATTATGAACGTATTCGCAAGGTCTGTAACAAACAGAAAGCAATTATGTTGGCAGATATGGCACATATTAGTGGGTTGGTCGCAGCTGGTGTAATACCATCACCATTTGATTATGCTGATGTTGTAACCACTACAACTCACAAGTCCCTTCGTGGGCCACGTGGAGCAATGATTTTCTTCAGGAAGGGTGTAAAGGAGATTAACAAACAAGGGAAGGAGGTGTTGTATGACTATGAGGACAAGATAAATCAGGCTGTCTTTCCTGGACTCCAAGGTGGTCCTCACAATCACACAATAACTGCCTTAGCAGTGGCTTTAAAACAGGCTATGACTCCTGAATACAGAGCATACCAGGAGCAAGTCATGAGCAATTCTGCAAAGTTTGCCGAGGCTTTGGCAGGGATGGGCTACGAACTTGTTTCTGGTGGAACAGAGAACCATTTAGTCTTAGTGAACTTGAAAAACAAGGGTATTGATGGCTCCAGAGTAGAGAAAGTTCTTGAAGCTGTTCACATTGCTGCAAACAAAAACACTGTGCCTGGGGATGTGTCTGCAATGGTTCCTGGTGGCATCAGGATGGGAACCCCGGCCCTTACATCTAGGGGCTTTGTTGAAGAAGACTTTGTTAAAGTGGCTGAGTACTTTGATGCTTCTGTGAAGCTGGCTCTAAAAATCAAGGCTGCATCTGCAGGAACAAAATTGAAGGACTTTGTTAGTACCTTGAATTCTGGTGATTTTCAGTCAGAGATTGCAAAACTCCGCCATGATGTTGAAGAGTATGCTAAACAATTCCCAACAATTGGATTTGAAAAGGAAACTATGAAGTACAAGGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_16196.p1 GENE.S_Transcript_16196~~S_Transcript_16196.p1 ORF type:complete len:517 (+),score=122.37,SHMT|PF00464.15|1.8e-211 S_Transcript_16196:263-1813(+)
MAMATTLRKLSNSVNKPIRSAFNGGPLYYMSSLPNEAVYEKEKRVSWPKQLNAPLEAVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSASLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITALAVALKQAMTPEYRAYQEQVMSNSAKFAEALAGMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDASVKLALKIKAASAGTKLKDFVSTLNSGDFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKD*

Click here to download the sequence:
Link to NCBI Protein BLAST