Transcript Information: S_Transcript_162451.p2


Annotated TAIR IDAT1G50500.2
Annotated Gene NameMembrane trafficking VPS53 family protein
Annotated Gene Symbol(s)HIT1
Annotation TypeOrtholog
Chromosome Positionchr1:18708217-18715597 | Reverse length=847
E-Value2.8E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0315268118458
Replicate 24.0420377815294
Replicate 31.1262739593038
Condition 2: 8 Hour
Replicate 12.2790493468692
Replicate 23.4155494106453
Replicate 32.115313121105
Condition 3: 24 Hour
Replicate 14.1688708951516
Replicate 22.941105319068
Replicate 31.7328122110385


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_162451.p2 GENE.S_Transcript_162451~~S_Transcript_162451.p2 ORF type:5prime_partial len:131 (-),score=19.28,Vps53_N|PF04100.8|1.3e-10,Vps53_N|PF04100.8|1.6e+03 S_Transcript_162451:437-829(-)
GAAAAGGACAGCCAAAAAGATTATTCAGTGCCTGGAGCTGGGTTCAATTTCCGTGGAATTATTTCATCTTGCTTTGAACCTCACCTGACGGTGTATGTAGAACTGGAAGAGAGAACACTAATGGAGCATCTGGAGAAACTTGTACAGGAAGAAACTTGGGAAACTGAAGAAGGCAGTCAGACCAATATCTTATCCAGTAGCATGCAGGTCTTTTTGATTATCAGACGGAGCTTGAAGCGGTGCAGTGCTTTGACAAAGAACCAGACATTGTTTAATTTGTTTAAGGTGTTCCAAAAAAATTCTAAAAGCTTATGCGAAGAAGCTGTTTGCCAGACTACCAAAGGGTGGAACCGGAATTGTAGCTGCGGCCACTGGAATGGACGGACAAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_162451.p2 GENE.S_Transcript_162451~~S_Transcript_162451.p2 ORF type:5prime_partial len:131 (-),score=19.28,Vps53_N|PF04100.8|1.3e-10,Vps53_N|PF04100.8|1.6e+03 S_Transcript_162451:437-829(-)
EKDSQKDYSVPGAGFNFRGIISSCFEPHLTVYVELEERTLMEHLEKLVQEETWETEEGSQTNILSSSMQVFLIIRRSLKRCSALTKNQTLFNLFKVFQKNSKSLCEEAVCQTTKGWNRNCSCGHWNGRTN*

Click here to download the sequence:
Link to NCBI Protein BLAST