Transcript Information: S_Transcript_163808.p1


Annotated TAIR IDAT1G78910.1
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:29665269-29667557 | Forward length=478
E-Value3.3E-244
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.87614818881253
Replicate 20.7717436676497
Replicate 30.75896033265846
Condition 2: 8 Hour
Replicate 12.808281852462
Replicate 22.8540218429281
Replicate 33.3333424238242
Condition 3: 24 Hour
Replicate 10.53937983927393
Replicate 20.74613371444765
Replicate 30.6746637392315


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_163808.p1 GENE.S_Transcript_163808~~S_Transcript_163808.p1 ORF type:complete len:486 (+),score=78.03,PseudoU_synth_2|PF00849.18|1.1e-21 S_Transcript_163808:169-1626(+)
ATGGGCATTGCCCTGCACCATAATCACAGGCACAACCGTTTACCCTGTCAGCTACTGCGTGCATTGAGACAATATTCCCGGATATCCCCTCCCCGAGCCGCCGAAACGGAGCCTGTGATCCGGGTTGTCAACAACATAGCTCACCTGGGCAGGCCCAAAGAGGGCCCAAAGCCGCGCCAGCTTCTCTCTCTTCCTCGTTTCCCTTCCCACCCTTTGCCTGCAAGATGTTTGACGAAATGCCCCAATGAGAAACCGTCTACCCGTGTCACTGCCATCAGTTGGGTCAAGTATTACTTTGATGAAGTTCATGATTCTGTTATTCAATCCCATTTCACTAAAGGCCTTATCCAAATGGAGTGTTTAAGTAAGAAAGATTCATCAAGCATCAAGGATCAAGAAAACAAGTCCATAGGGAAGATTAAGCACAATGAAGTCATGAAGGCAGGTGTGAAGATTTATGTGCCTGTATCAATTGCTGAAAGTAGGATTTCCAAGAGATTTGACCCCATACCTAGTGGGACTTTATATCCAAATGCTGATGAAATAGCGTACTTGCAGAGGCTTGTAATGTATAAGGATTCTGCAATTATTGTGCTTAATAAGCCTCCAAAGTTACCAGTAAAGGGTAATCTGCCTGTCCATAATAGCATGGATGCTTTAGCAGCAGCTGCATTATCCTTTGATTACGAGGAAGGTCCTCAATTGGTACACCGTCTAGACAGAGAAAGCAGTGGCATCATCTTGATGGGGAGGACCAAAGAAAGTGCATCATATCTTCAACGACTATTCACCAATGTTAATATAGCAAAAACATCATGTTCGGCCTGGAATGATGCATGTGAAGCGACATTCATGAGATATTGGGCATTGATTATTGGCGCCCCCAAAGAAAAGGAGGGTTTAATTTGTGTCCCTCTTACAAAGGTGCTTCTTGATGATGGAAAAACTGAGAGGGTCATGTTGGCCCATCAATCCGGTTTAGAGGCTTGCCAAGAAGCTGTCACTGAGTATCGGGTGCTTGGCCCTATGATCAATGGATGTTCATGGATCGAGCTGCGGCCACATACCAGCAGGAAGCATCAGCTTCGAGTTCACTGTGCTGAAGCTCTTGGCACACCCATTGTTGGCGACTACAAGTATGGTTGGTTTGTACACCAAAGATGGAAGCAAACACCTCAAGTAAACATCGAGCCCACAAGTGGAGAGCCTTACAGGTTGCGGCGTCCTGAAGGTTTGGATGTTCAAAAAGGAAGTGTCATGTCAAAAGTTCCATTGTTACACCTCCATTGTAGAGAGCTTGTCCTCCCTAACATTTCAAAATTCATGGGGGTTTTGCAACATCAGTCAGCTGATCATTACCCCCATCTTAGTACTAAGTCAGATGTCCTTCGGTTTGTGGCATCCATGCCCTCCCACATGAAAATTAGTTGGAATCTAATGTCATCATATTTGGTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_163808.p1 GENE.S_Transcript_163808~~S_Transcript_163808.p1 ORF type:complete len:486 (+),score=78.03,PseudoU_synth_2|PF00849.18|1.1e-21 S_Transcript_163808:169-1626(+)
MGIALHHNHRHNRLPCQLLRALRQYSRISPPRAAETEPVIRVVNNIAHLGRPKEGPKPRQLLSLPRFPSHPLPARCLTKCPNEKPSTRVTAISWVKYYFDEVHDSVIQSHFTKGLIQMECLSKKDSSSIKDQENKSIGKIKHNEVMKAGVKIYVPVSIAESRISKRFDPIPSGTLYPNADEIAYLQRLVMYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSFDYEEGPQLVHRLDRESSGIILMGRTKESASYLQRLFTNVNIAKTSCSAWNDACEATFMRYWALIIGAPKEKEGLICVPLTKVLLDDGKTERVMLAHQSGLEACQEAVTEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQTPQVNIEPTSGEPYRLRRPEGLDVQKGSVMSKVPLLHLHCRELVLPNISKFMGVLQHQSADHYPHLSTKSDVLRFVASMPSHMKISWNLMSSYLV*

Click here to download the sequence:
Link to NCBI Protein BLAST