Transcript Information: S_Transcript_164119.p1


Annotated TAIR IDAT1G05750.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)PDE247, CLB19
Annotation TypeOrtholog
Chromosome Positionchr1:1721523-1723025 | Forward length=500
E-Value1E-199
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.65362337772
Replicate 21.6279339867681
Replicate 31.6473123492148
Condition 2: 8 Hour
Replicate 12.857188217247
Replicate 22.6498694505307
Replicate 33.9734395535499
Condition 3: 24 Hour
Replicate 11.5270209818668
Replicate 21.2322072313354
Replicate 31.7630943661829


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_164119.p1 GENE.S_Transcript_164119~~S_Transcript_164119.p1 ORF type:complete len:515 (+),score=83.24,PPR_2|PF13041.2|8.2e-08,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|6.9e-05,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|0.74,PPR_2|PF13041.2|2.6e+03,PPR_2|PF13041.2|29,PPR|PF01535.16|0.53,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|1.1,PPR|PF01535.16|3.6e-06,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|9.5e-06,PPR|PF01535.16|7.3e-08,PPR|PF01535.16|0.015,PPR|PF01535.16|0.0021,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|0.81,PPR_1|PF12854.3|5.4,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.08,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|0.0065,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|0.0038,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|0.078,PPR_3|PF13812.2|85,PPR_3|PF13812.2|0.77,TPR_19|PF14559.2|2.8e+03,TPR_19|PF14559.2|1.6e+02,TPR_19|PF14559.2|86,TPR_19|PF14559.2|9.2e+02,TPR_19|PF14559.2|3.2,TPR_19|PF14559.2|14 S_Transcript_164119:118-1662(+)
ATGAACCTTCCCGCCAGACCATCAACTACCCAACTCCAACAACCTGTTCTTCCTTCAAATCCAACCCAACCCACCTTCCCTAAATCAACTCACAACAACTTCAATCCCACTAAATCTAAAAATGTCTCTCTTAGACATTTTCACAAACAGGTTGACCCCATTGTCTCTTGGACCAACGCCATCGCTCGTCACTGCCAAAATGGCAACCTCTCTGAAGCTGCCACCGAATTCGCCCGAATGAGACTTTCGGGTGTCGACCCGAATCACATTACTTTCATAACTCTTCTCTCTGGCTGTGCCCATTTCCCATCAAAAGGCCGGTCATTTGGGCCTATAATTCATGCCTATGTCAGAAAATTGGGGTTGGATAAGCATAATGTTAAGGTGGGCACAGCTTTAGTTGATATGTACTCAAAGTGTAGCCTTGTAGAGCATGCAAGAGTGACTTTTGATGAGATTTTGGATAAAAATTCGGTGTCTTGGAACACTATGATTAATGGGTACATGAGGAATCACAAGGTGGCTTATGCGGTCAAGCTGTTCGTTGAAATGCCTGTGAGAGATGCAATTTCGTGGACTGCGTTGATTAATGGGTTTGTGAAGAAGGGTCTTGATGAGAAAGCTTTGAAATATTTTGTTGAGATGCAACTTGCAGGGGTTCCGCCGGATTATGTAACGATTATTGCGGTACTATCTGCTTGTGCTAATCTTGGTGCCCTTAATTTAGGGCTGTGGATTAATAGGTTTGTTATGGGAAAGGAGTTTAAGGATAATATCCGTGTGTGTAACACGTTGATAGATATGTATTCGCGATGTGGTCATGTGGATTTTGCTCGTGAAATATTTGAACGGATGCCAAAGCGTAGTTTGGTGTCGTGGAACTCTATGATTGGTGGGTTTGCAGCCAATGGTCATGCGGAGGAGGCATTGAGGTTGTTTGATATGATACAGAGGGAAGGGTTTGCACCGGATGGAGTAAGTTTTACAGGAGCTCTTACTGCTTGCAGCCATGCCGGTTTGGTGGATCAAGGCCTCAAGTATTTTGATGAAATGCAGAGAGTTCATAAGCTGCCTCCACGGATTGAGCACTATGGATGCTTAGTTGATTTATATAGTCGTGCAGGGAGGTTAGAGGATGCGTTGAATGTGATAAAAAGCATGCCAATGAAGCCTAATGATGTTGTTCTAGGGTCATTGTTGGCCGCTTGTAGAAATTGTGGCGATGTTGGCTTGGCAGAGATGTTGATGAAATATCTATTGGAGTTGGATCCTGGCTGTGATTCCAATTACGTGCTGCTTGCAAATATGTATGCAGCAGCTGGAAGTTGGGAGGGTGCAGGCAAGGTTAGAAGGAAAATGAAGACTCACGGGATACAGAAGAGACCAGGAATCAGTTCAATTGAAATCGGAGATATTATTCATGAGTTTGTGGCCGGTGATAGATCCCATCCAGAGACGGGTCCTATTTATGGTATTCTAGAGCTTCTGTCTTATGAGCTGGGGATATGTGGGTATGTTCCTGAAGCTACTGCAACGGAAACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_164119.p1 GENE.S_Transcript_164119~~S_Transcript_164119.p1 ORF type:complete len:515 (+),score=83.24,PPR_2|PF13041.2|8.2e-08,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|6.9e-05,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|0.74,PPR_2|PF13041.2|2.6e+03,PPR_2|PF13041.2|29,PPR|PF01535.16|0.53,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|1.1,PPR|PF01535.16|3.6e-06,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|9.5e-06,PPR|PF01535.16|7.3e-08,PPR|PF01535.16|0.015,PPR|PF01535.16|0.0021,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|0.81,PPR_1|PF12854.3|5.4,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.08,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|0.0065,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|0.0038,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|0.078,PPR_3|PF13812.2|85,PPR_3|PF13812.2|0.77,TPR_19|PF14559.2|2.8e+03,TPR_19|PF14559.2|1.6e+02,TPR_19|PF14559.2|86,TPR_19|PF14559.2|9.2e+02,TPR_19|PF14559.2|3.2,TPR_19|PF14559.2|14 S_Transcript_164119:118-1662(+)
MNLPARPSTTQLQQPVLPSNPTQPTFPKSTHNNFNPTKSKNVSLRHFHKQVDPIVSWTNAIARHCQNGNLSEAATEFARMRLSGVDPNHITFITLLSGCAHFPSKGRSFGPIIHAYVRKLGLDKHNVKVGTALVDMYSKCSLVEHARVTFDEILDKNSVSWNTMINGYMRNHKVAYAVKLFVEMPVRDAISWTALINGFVKKGLDEKALKYFVEMQLAGVPPDYVTIIAVLSACANLGALNLGLWINRFVMGKEFKDNIRVCNTLIDMYSRCGHVDFAREIFERMPKRSLVSWNSMIGGFAANGHAEEALRLFDMIQREGFAPDGVSFTGALTACSHAGLVDQGLKYFDEMQRVHKLPPRIEHYGCLVDLYSRAGRLEDALNVIKSMPMKPNDVVLGSLLAACRNCGDVGLAEMLMKYLLELDPGCDSNYVLLANMYAAAGSWEGAGKVRRKMKTHGIQKRPGISSIEIGDIIHEFVAGDRSHPETGPIYGILELLSYELGICGYVPEATATET*

Click here to download the sequence:
Link to NCBI Protein BLAST