Transcript Information: S_Transcript_164410.p1


Annotated TAIR IDAT5G58575.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23674399-23675224 | Forward length=181
E-Value5.8E-79
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.951208888021
Replicate 26.7414079203518
Replicate 38.965218929528
Condition 2: 8 Hour
Replicate 115.105484807969
Replicate 216.986033226459
Replicate 315.986885703736
Condition 3: 24 Hour
Replicate 19.3043022274753
Replicate 28.3940042875361
Replicate 38.5241168591365


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_164410.p1 GENE.S_Transcript_164410~~S_Transcript_164410.p1 ORF type:complete len:216 (+),score=47.98,Sgf11|PF08209.7|8.6e-17 S_Transcript_164410:161-808(+)
ATGGAGCTTTCATGTGAGCCTAAAATCAAACTCTGCCAAAGGGTTTTCGCTAATCGACCCTATTTCAAAGACCCACTTTTTTTCCCCCAGGCTCGCATTGTCTTCATCGAAGCATTGATGTCTGCAGCCAATGAAGGCAGTACATCTCAAGCTCAGCTATCGTCACAGTTTTTCAATGACATGTTGGATTCCATTATTGTTGATGTTGCATCAGAGTGTCACCGGATAGCAAGGCTTGGCCTTGATCGGAATTTGGAAGAAGAGGAAGAAGAACTCAAGTTGTCAGCACAGGCTAGGGCAAAGCTCGCTGATTCAAGTAACAGTGGTGAAGCTAATGGCAAGTATGTAGTGGACATATTTGGACAAACACACCCAACCGTGGCCAATGAAATATTTGAATGCATGAACTGCAGAAGGTCAATAGCTGCTGGAAGATTTGCCCCACATTTGGAGAAATGCATGGGAAAGGGTAGAAAGGCACGCAAGGTAACAAGAAGCAGCACAGCAGCACAGAATCGACACTCCCGAGGAAGCCCACTCTCCACACATTCCCCTTACTCAAATTCCACATCCATGAACCGATTATCAAATGGATCACCAGTTGTTGCAGGTGATGAGTACCTCAATGGAACAGCTGAAGACTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_164410.p1 GENE.S_Transcript_164410~~S_Transcript_164410.p1 ORF type:complete len:216 (+),score=47.98,Sgf11|PF08209.7|8.6e-17 S_Transcript_164410:161-808(+)
MELSCEPKIKLCQRVFANRPYFKDPLFFPQARIVFIEALMSAANEGSTSQAQLSSQFFNDMLDSIIVDVASECHRIARLGLDRNLEEEEEELKLSAQARAKLADSSNSGEANGKYVVDIFGQTHPTVANEIFECMNCRRSIAAGRFAPHLEKCMGKGRKARKVTRSSTAAQNRHSRGSPLSTHSPYSNSTSMNRLSNGSPVVAGDEYLNGTAEDS*

Click here to download the sequence:
Link to NCBI Protein BLAST