Transcript Information: S_Transcript_164415.p2


Annotated TAIR IDAT5G58575.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23674399-23675224 | Forward length=181
E-Value3.2E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1661745191426
Replicate 20.51308812924453
Replicate 30.21445041957675
Condition 2: 8 Hour
Replicate 11.4878179291023
Replicate 22.3412399739249
Replicate 30.74357607924353
Condition 3: 24 Hour
Replicate 10.50802054629289
Replicate 20
Replicate 31.173118344424


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_164415.p2 GENE.S_Transcript_164415~~S_Transcript_164415.p2 ORF type:5prime_partial len:86 (-),score=19.92,Sgf11|PF08209.7|6.7e-16 S_Transcript_164415:80-337(-)
AGGCTTGGCCTTGATCGGAATTTGGAAGAAGAGGAAGAACTCAAGTTGTCAGCACAGGCTAGAGCAAAGCTCGCTGATTCAAGTAACAGTGGTGAAGCTAATGGCAAGTATGTAGTGGACATATTTGGACAAACACACCCAACCGTGGCCAACGAAATATTTGAATGCATGAACTGTAGAAGGTCAATAGCTGCTGGAAGATTTGCCCCACATTTGGAGAAATGCATGGGAAAGGTATTTAAAATACAAAAGAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_164415.p2 GENE.S_Transcript_164415~~S_Transcript_164415.p2 ORF type:5prime_partial len:86 (-),score=19.92,Sgf11|PF08209.7|6.7e-16 S_Transcript_164415:80-337(-)
RLGLDRNLEEEEELKLSAQARAKLADSSNSGEANGKYVVDIFGQTHPTVANEIFECMNCRRSIAAGRFAPHLEKCMGKVFKIQKR*

Click here to download the sequence:
Link to NCBI Protein BLAST