Transcript Information: S_Transcript_16482.p1


Annotated TAIR IDAT1G52220.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19453770-19454605 | Reverse length=156
E-Value2.7E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1107.70228016654
Replicate 2116.38491672622
Replicate 3119.56834266281
Condition 2: 8 Hour
Replicate 175.855415222017
Replicate 281.079182989613
Replicate 387.838459258111
Condition 3: 24 Hour
Replicate 1138.83962862814
Replicate 2153.47507302372
Replicate 3149.13168537522


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_16482.p1 GENE.S_Transcript_16482~~S_Transcript_16482.p1 ORF type:5prime_partial len:149 (+),score=19.20,CAAD|PF14159.2|5e-30 S_Transcript_16482:3-449(+)
GTTCCTGGCATGACTTCGATTATTTCCACTTTGCCTTTACCCCTTTACATTAATGGGGCAAAACCCTCTTTAAAACCCACTTCTATATTCCCTGTTTGTGCTCTCCCAGAAAGGCAAAGACGGGTGGGAGTTGTAGTGAAAGCTACAGGTTACAGTTCTGAATCTTCAACATCTCTGAGTATTGTCAAGTCCATGCAGAATGTTTGGGATAAACCTGAGGATCGAGTTGGTGTTATTGGTGTGGGGTTGACCGCTGTTATAGCACTCTGGGCATCATTAAATTTGGTTTCAGCAATTGACAAGCTTCCCTTGGTACCAAGTTTCCTGGAATTCGTTGGCATATTGTTTTCTGGATGGTTTGTATACCGATATCTCCTGTTCAAGCCTCAAAGAGAGGAATTGGTTCGGAACATCAACAACTCGATTACGAACATCTTAGGCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_16482.p1 GENE.S_Transcript_16482~~S_Transcript_16482.p1 ORF type:5prime_partial len:149 (+),score=19.20,CAAD|PF14159.2|5e-30 S_Transcript_16482:3-449(+)
VPGMTSIISTLPLPLYINGAKPSLKPTSIFPVCALPERQRRVGVVVKATGYSSESSTSLSIVKSMQNVWDKPEDRVGVIGVGLTAVIALWASLNLVSAIDKLPLVPSFLEFVGILFSGWFVYRYLLFKPQREELVRNINNSITNILGQ*

Click here to download the sequence:
Link to NCBI Protein BLAST