Transcript Information: S_Transcript_16483.p1


Annotated TAIR IDAT1G52220.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19453770-19454605 | Reverse length=156
E-Value1E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1159.47009333893
Replicate 2176.84704754695
Replicate 3163.247031115
Condition 2: 8 Hour
Replicate 146.815895930581
Replicate 240.723755727002
Replicate 343.297815447618
Condition 3: 24 Hour
Replicate 1183.80421499508
Replicate 2164.13557290058
Replicate 3150.93817198687


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_16483.p1 GENE.S_Transcript_16483~~S_Transcript_16483.p1 ORF type:5prime_partial len:128 (+),score=15.41,CAAD|PF14159.2|0.0027,CAAD|PF14159.2|1.6e-07 S_Transcript_16483:3-386(+)
GTTCCTGGCATGACTTCGATTATTTCCACTTTGCCTTTACCCCTTTACATTAATGGGGCAAAACCCTCTTTAAAACCCACTTCTATATTCCCTGTTTGTGCTCTCCCAGAAAGGCAAAGACGGGTGGGAGTTGTAGTGAAAGCTACAGGTTACAGTTCTGAATCTTCAACATCTCTGAGTATTGTCAAGTCCATGCAGAATGTTTGGGATAAACCTGAGGATCGAGTTGGTGTTATTGGTGTGGGGTTGACCGCTGTTATAGCACTCTGGGCATCATTAAATTTGGTTTCATGGTTTGTATACCGGTATCTCCTGTTCAAGCCTCAAAGAGAGGAATTGGTTCGGAACATCAACAACTCGATTACGAACATCTTAGGCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_16483.p1 GENE.S_Transcript_16483~~S_Transcript_16483.p1 ORF type:5prime_partial len:128 (+),score=15.41,CAAD|PF14159.2|0.0027,CAAD|PF14159.2|1.6e-07 S_Transcript_16483:3-386(+)
VPGMTSIISTLPLPLYINGAKPSLKPTSIFPVCALPERQRRVGVVVKATGYSSESSTSLSIVKSMQNVWDKPEDRVGVIGVGLTAVIALWASLNLVSWFVYRYLLFKPQREELVRNINNSITNILGQ*

Click here to download the sequence:
Link to NCBI Protein BLAST