Transcript Information: S_Transcript_167340.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value3E-143
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.4355002058634
Replicate 23.9090227744546
Replicate 33.6830088575358
Condition 2: 8 Hour
Replicate 15.1872571041675
Replicate 24.4340600907566
Replicate 35.216941681099
Condition 3: 24 Hour
Replicate 13.8704147926278
Replicate 23.1307367342702
Replicate 34.9232218808785


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_167340.p1 GENE.S_Transcript_167340~~S_Transcript_167340.p1 ORF type:complete len:666 (+),score=108.55,SEO_N|PF14576.2|7.8e-115,SEO_C|PF14577.2|2.8e-105 S_Transcript_167340:242-1999(+)
ATGTCGCTCCTGAACATGCTCTCAAACTATGCGTGGGATGCAAAGGTGGTGATTTCCCTTGCTTCCCTGGCTATAACTTACGGGGAGTTCTGGCTCGTTGTTGAGCTCTATGCAAAGCACCCTCTTGCCAAGTCAGTGGCTGTTCTCAAGCAGTTGCCAGAACTGATTGAGCACTCAAATGCCTTGAAATCGCGCTTTGATGGTCTAAATAGCCTCATCAAGGCCATGTTAGATGTGACCAAGAGAATTGTGGAGTTCAGGCAACTGCCTCACCAGTACATCTCACCTGAGCACCCGCCTTTGTCCGTTGCTATGACACATATTCCTACTGCTGCTTACTGGACTATACGCAGTGTGGTCGCCTGTGCTCAACAGATTGCTAGCCTTATAGGCATGAGTTATGAGTTTATTACATCCACCACAGAGGTGTGGGAACTGTCGAGCTTAGCTCACAAGGAGAGGAACATACATGATCACCTTATGCAACAGCTTGCTCTTTGTCATCAACATATAGATGAAAAGAAGCACATAGAGGCATACCTCACTCTCGTCCGCCTCTTTGATATGCCCCACCTTGACAACACCAGGATTCTCAGGCATCTGATATACCTCAAAGATGATATGCTGCCCCTTTTTGAAGGCTCTACCAAATCAAGGGTTCATGTTGAAGCGCTAAGGAGAAAAACAGTGCTGCTACTCATATCAGACCTTGATATCTCCCACGAAGAGTTGATGATCCTACACCATATCTACAGGGAATCAAGGTCGCGGCCTGAGTTCCAATATGAAATTGTTTGGATCCCAATTGTGGACAGATCTGCTCCTTGGACTGAAGCACAACAGGAACGATTCCAGCAACTCCAGTCGATGATGCCTTGGTACACTTTGCACCACCCCAAACTACTTGAACCACCAGCTCTCAAGTATATCAAAGAAGTATGGCGGTTTGCCAAGAAGATGATTGTGGTTGTGTTGGACCCGCAAGGAAAAGTGGCATGCCCAAATGCCCTTCACATGATCTGGATTTGGGGAAATTCAGCCTTCCCTTTTACTGCTATGAAGGAGGAAGCTCTATGGAGGGAAGAGGTTTGGAGGCTCGAGCTAGTCGTGGATGCCATTGATCCTAACATACTTGAATGGATAGCACAAGGGAAACACATATGTGTATACGGAGGGGAGGACATCGACTGGATCAGAAGATTCACGAACACCACAAAACAAATAGCCAACACTGCAGGAATAGATCTTGAGCTGGTCTATGCAGGGAAAAGCAACGCAAAAGAGCGTGTCAGGAAGATCACAGGAATCATAAACCAAGAGAGACTCAGCCATTTCTGGCCTGACATCACCTCAGTCTGGTACTTCTGGACTAGGCTCGAGTGCATGCTCTACTCGAAAATGCAGCATGGCAGGAATGTCGAGAGTGATCACATAATGCAGGAAGTCATGACTGTTCTGAGCTTCGATGGGAGTGACCAAGGCTGGGCCATCTTTTGCCTCGGATCAACTGAGATGACAAGGGCAAAAGGTGACTTGATACTCGAGAGCTTTGGAAGGTTCGAGGAATGGGAGGAGAATGCGAGGGTGAAAGGCTTCGTGCCAGCTCTCAGGGAACACCTTCAGCAGCTTCACACCCCACATCACTGCAATAGGCTCATACTTCCTGGGATCGAAGGAGGAATACCCGAGAGAGTGGTTTGCGCAGAGTGTGGAAAACAGATGGAGAAGTACTTCATGTACCGCTGTTGCACTGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_167340.p1 GENE.S_Transcript_167340~~S_Transcript_167340.p1 ORF type:complete len:666 (+),score=108.55,SEO_N|PF14576.2|7.8e-115,SEO_C|PF14577.2|2.8e-105 S_Transcript_167340:242-1999(+)
MSLLNMLSNYAWDAKVVISLASLAITYGEFWLVVELYAKHPLAKSVAVLKQLPELIEHSNALKSRFDGLNSLIKAMLDVTKRIVEFRQLPHQYISPEHPPLSVAMTHIPTAAYWTIRSVVACAQQIASLIGMSYEFITSTTEVWELSSLAHKERNIHDHLMQQLALCHQHIDEKKHIEAYLTLVRLFDMPHLDNTRILRHLIYLKDDMLPLFEGSTKSRVHVEALRRKTVLLLISDLDISHEELMILHHIYRESRSRPEFQYEIVWIPIVDRSAPWTEAQQERFQQLQSMMPWYTLHHPKLLEPPALKYIKEVWRFAKKMIVVVLDPQGKVACPNALHMIWIWGNSAFPFTAMKEEALWREEVWRLELVVDAIDPNILEWIAQGKHICVYGGEDIDWIRRFTNTTKQIANTAGIDLELVYAGKSNAKERVRKITGIINQERLSHFWPDITSVWYFWTRLECMLYSKMQHGRNVESDHIMQEVMTVLSFDGSDQGWAIFCLGSTEMTRAKGDLILESFGRFEEWEENARVKGFVPALREHLQQLHTPHHCNRLILPGIEGGIPERVVCAECGKQMEKYFMYRCCTE*

Click here to download the sequence:
Link to NCBI Protein BLAST