Transcript Information: S_Transcript_167417.p1


Annotated TAIR IDATMG01250.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)
Annotated Gene Symbol(s)ORF102
Annotation TypeHomolog
Chromosome PositionchrM:310514-310882 | Forward length=122
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4288859723587
Replicate 21.4807241313768
Replicate 30.49510700895572
Condition 2: 8 Hour
Replicate 12.146851374208
Replicate 21.6516129868255
Replicate 31.5736531788912
Condition 3: 24 Hour
Replicate 11.7593194757526
Replicate 21.9773795335068
Replicate 31.3542037264492


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_167417.p1 GENE.S_Transcript_167417~~S_Transcript_167417.p1 ORF type:5prime_partial len:149 (+),score=3.69,RVT_1|PF00078.23|1.1e-19 S_Transcript_167417:2-448(+)
TTCAAGTTAGATTTTGAGAAGGCCTATGATAGGGTGTCTTGGGGTTTCTTGGATAGGGTTATGGCGGCTAAGGGCTTCGGTGAGCGGTGGCGTAAGTGGATTCGGGGTTGCTTCAGTAATGCTAGTTTCTCGGTGTTGGTTAATGGGGCCCCTAGGGATTGGTTTTCTTCTTCCCGGGGATTGAGGCAGGGAGATCCTCTGTCTCCTTTCCTTTTTACCTTGGTGGTCGACGTCTTGAGCCGCATGATAGATAGGGGGTGGAGGTGGGGGAACTGGAGTGTTTTAGGGTCGGGAGGGAAGGTGTTCCTGTTTCCCACCTCCAGTTTGCGGATGATACGATCCTTTTCCTCTCTGCGAGTCATGAGGTGCTCCGCAAGGTTCTTACTCTTTTGGAGGTTTTCGAGTTGGTCTCAGGACTGCGGGTTAATCTTTCTAAGTGTGGTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_167417.p1 GENE.S_Transcript_167417~~S_Transcript_167417.p1 ORF type:5prime_partial len:149 (+),score=3.69,RVT_1|PF00078.23|1.1e-19 S_Transcript_167417:2-448(+)
FKLDFEKAYDRVSWGFLDRVMAAKGFGERWRKWIRGCFSNASFSVLVNGAPRDWFSSSRGLRQGDPLSPFLFTLVVDVLSRMIDRGWRWGNWSVLGSGGKVFLFPTSSLRMIRSFSSLRVMRCSARFLLFWRFSSWSQDCGLIFLSVV*

Click here to download the sequence:
Link to NCBI Protein BLAST