Transcript Information: S_Transcript_167990.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value2E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.84041056532149
Replicate 20.2322398900791
Replicate 31.1648043842274
Condition 2: 8 Hour
Replicate 10.22447779281193
Replicate 20.23549314357607
Replicate 30.67313202963099
Condition 3: 24 Hour
Replicate 10.22994614200625
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_167990.p1 GENE.S_Transcript_167990~~S_Transcript_167990.p1 ORF type:internal len:95 (+),score=4.00,DDE_Tnp_4|PF13359.2|9.6e-18,Plant_tran|PF04827.10|4e-09 S_Transcript_167990:3-284(+)
GCAAGCAAATATTATTTGGTAGATAAAGGCTACCCAGAAAGACAAGGATATTTAACACCTTATCCCAAAATAAGATATCATCAATCTGAGTTTTGTGGTGCAAATCCAAGAGGGTCTCAAGAAATCTTCAATCGGGCACATTCATCCCTAAGAAGCTGTATTGAGAGGGCATTTGGTGTTTTAAAGGCTCGTTGGAAGATATTAGCAAAAATGCCAATATATTCACTAAAGGATCAAAATAGAATAATTTGCTCATGTTTTGCATTGCACAATTATATTAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_167990.p1 GENE.S_Transcript_167990~~S_Transcript_167990.p1 ORF type:internal len:95 (+),score=4.00,DDE_Tnp_4|PF13359.2|9.6e-18,Plant_tran|PF04827.10|4e-09 S_Transcript_167990:3-284(+)
ASKYYLVDKGYPERQGYLTPYPKIRYHQSEFCGANPRGSQEIFNRAHSSLRSCIERAFGVLKARWKILAKMPIYSLKDQNRIICSCFALHNYIR

Click here to download the sequence:
Link to NCBI Protein BLAST