Transcript Information: S_Transcript_168565.p1


Annotated TAIR IDAT5G20600.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:6966345-6967943 | Reverse length=532
E-Value1E-70
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.0325867720373
Replicate 25.0206989057165
Replicate 33.3102346816719
Condition 2: 8 Hour
Replicate 14.6478414793751
Replicate 24.589097156867
Replicate 34.9190417549957
Condition 3: 24 Hour
Replicate 15.6012521770754
Replicate 24.3584253031437
Replicate 33.7994746379502


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_168565.p1 GENE.S_Transcript_168565~~S_Transcript_168565.p1 ORF type:internal len:312 (-),score=57.84,Nop52|PF05997.8|7.6e-55 S_Transcript_168565:2-934(-)
CAACAGAAGACCCAACACCCACAACAGGCTCCCAATAAACTCATCAAGGGTTTAGCCTCATGCAATTCCACCCTCAGATCTAAATCCCTAAAAGCCCTTCTCACTTGGCTCCCTTCCCAAACCCTAATTCCTGATGACGACCTCAAAAAGCTTTGGAAATCCCTCTTTTACTGTATGTGGCATTCTGACAAGATCCAAAACCAAACCCATCTCATCAATCTACTTTCCTCCCTTCTCCCTAATCTAAACCCTAATCTTTCTCTCTCTTACTTCTCCATTTTCCTCGTTACTATGCGCAGGGAATGGCCCGGTATTGACCATCTCAGGTTAGACAAGTTTTATCTTTTAATCCGTTCATTTGTGAGAAATTTGCTTGTTTTGCTCAAGAATAAGAATTGGGATTTGGGGGTTTTGGAGAGTTTTGTTGGGGTTTTGGAAAACAGGGCTTTTTTGGTTTGTGATGATGTTAATGATAATGGGTTGGGTAATGGTGTCGCTTATCATATTGTTTCTGTTTTTTGTGATGAGATCAAACCCATTTTGCCCTTGAGTTTTGATGTCTTGAATTTGTTGTTTAGGCCCTTTTTTGGGGTTTTGGGTAAGAGTGAGAATAGGGTTTTGGTGGGTAAGGTTAAAAGTTGTGTTTTTGATTGTTTGCTTAAGAACGGCAACGCTTTGTTGAGCGCTAGGAAGGATAATGGTAGTAATAATGAGGAGGAGATTGATGAGAAGAGTGAGGTGGTTTTGTTCGGGACTATAGCGTTGGCTATGGGGTTTTCGACCAGGTTTTATGAGTTGGGTTCGGGTTCGGATTGTGTTCAAGGGAATAGGAAGGTTTTGTTTGGTTTACATGAGGAGTTTTCGAGGTTGGAGAAGGAGAAGGGTTCGCTTGGGATTGAGGTTTCGCTTCCTGAGGGTAGTAATGTTGTTGGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_168565.p1 GENE.S_Transcript_168565~~S_Transcript_168565.p1 ORF type:internal len:312 (-),score=57.84,Nop52|PF05997.8|7.6e-55 S_Transcript_168565:2-934(-)
QQKTQHPQQAPNKLIKGLASCNSTLRSKSLKALLTWLPSQTLIPDDDLKKLWKSLFYCMWHSDKIQNQTHLINLLSSLLPNLNPNLSLSYFSIFLVTMRREWPGIDHLRLDKFYLLIRSFVRNLLVLLKNKNWDLGVLESFVGVLENRAFLVCDDVNDNGLGNGVAYHIVSVFCDEIKPILPLSFDVLNLLFRPFFGVLGKSENRVLVGKVKSCVFDCLLKNGNALLSARKDNGSNNEEEIDEKSEVVLFGTIALAMGFSTRFYELGSGSDCVQGNRKVLFGLHEEFSRLEKEKGSLGIEVSLPEGSNVVG

Click here to download the sequence:
Link to NCBI Protein BLAST