Transcript Information: S_Transcript_168569.p1


Annotated TAIR IDAT5G20600.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:6966345-6967943 | Reverse length=532
E-Value1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8018573193115
Replicate 23.8203964601757
Replicate 32.3951605303377
Condition 2: 8 Hour
Replicate 15.446744713034
Replicate 22.808587058667
Replicate 33.5987794657761
Condition 3: 24 Hour
Replicate 12.8369978559213
Replicate 22.8452404143466
Replicate 31.8561677700735


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_168569.p1 GENE.S_Transcript_168569~~S_Transcript_168569.p1 ORF type:internal len:231 (-),score=82.87 S_Transcript_168569:2-691(-)
GTTGTTGGCCAGGATGACAGGGAGGTGTCCCAATTGATCCCTGTTAATGGTGAGTCTAAAGCTTCGAAAGATAAGAAGAAGTCTAAGAAGAAGAAAAAGAAGAATGAAGTTGCTGTTGAAGATGGGTCAAGTGGGAGCTGTAGTAATGGGGATACAGAAATGGTTAGTTCAAATGACGGTGATTCGAATGCTGAACCAGAAGATGGAGAGGATGCCCTTGAACTTGACGATAACACGATGTCTAATCTTCAAAAGCAGTTTGAGAAGATTGTTGCCGAGTCTGGTTTGGATGGTGATGGTGAGAGTGCACTTGAAACTCCTGCCACAGTTAAAGTCAATGGTAAGGCGAAGAAGCGCAAGAGATCAAAGTCAGTGGTTAGTGCTGAAACAGCTGAGAAAGAACGTGTGGTAGAAGAAGGTGCCCTCAAGACAGAGGAAAATAGTGGCAAGAGAGTTAGGTTTTCAATGAAGAATAATCTCATTTGGAAGCCACATAGTCCCTTGCCTCCACAGAATTTGAGAATACCTCCATCTGTTACCCCTAGGGGCAGCGCTCTTAAGCCTGTTGTATCTCCTGGACCTATCAGAGACATATCAAAAGACGCCAAGAAAGCAAAGAAGAAGAAAGCAAGTCCTATGAAGAAAGCTAGAAAAGTGAAGACCATATCTCCTGCAGTTAAACGTGTGAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_168569.p1 GENE.S_Transcript_168569~~S_Transcript_168569.p1 ORF type:internal len:231 (-),score=82.87 S_Transcript_168569:2-691(-)
VVGQDDREVSQLIPVNGESKASKDKKKSKKKKKKNEVAVEDGSSGSCSNGDTEMVSSNDGDSNAEPEDGEDALELDDNTMSNLQKQFEKIVAESGLDGDGESALETPATVKVNGKAKKRKRSKSVVSAETAEKERVVEEGALKTEENSGKRVRFSMKNNLIWKPHSPLPPQNLRIPPSVTPRGSALKPVVSPGPIRDISKDAKKAKKKKASPMKKARKVKTISPAVKRVK

Click here to download the sequence:
Link to NCBI Protein BLAST