Transcript Information: S_Transcript_168571.p2


Annotated TAIR IDAT3G25970.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:9500116-9502221 | Reverse length=701
E-Value4.3E-106
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2378140109386
Replicate 21.1972056349039
Replicate 30.50038431234575
Condition 2: 8 Hour
Replicate 12.810322754971
Replicate 23.1216532985665
Replicate 32.8090651882534
Condition 3: 24 Hour
Replicate 11.1853812746834
Replicate 20.7027538473286
Replicate 30.97759862035334


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_168571.p2 GENE.S_Transcript_168571~~S_Transcript_168571.p2 ORF type:complete len:258 (+),score=54.02,PPR|PF01535.16|9.8,PPR|PF01535.16|4.4e-06,PPR|PF01535.16|0.1,PPR|PF01535.16|0.064,PPR|PF01535.16|1.8e+02,PPR|PF01535.16|15,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|3.1e+03,PPR_3|PF13812.2|5.5e+02,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|1.4e+04,PPR_2|PF13041.2|4.9e+03,PPR_2|PF13041.2|7e-09,PPR_2|PF13041.2|28,PPR_2|PF13041.2|6.3,PPR_2|PF13041.2|1.4e+03,PPR_2|PF13041.2|6.1e+02,PPR_2|PF13041.2|3.8e+03,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|0.0051,PPR_1|PF12854.3|4.2e+02,PPR_1|PF12854.3|0.028,PPR_1|PF12854.3|2.4e+03,PPR_1|PF12854.3|6.6e+03,PPR_1|PF12854.3|1.7e+03,DYW_deaminase|PF14432.2|1e-05 S_Transcript_168571:1586-2359(+)
ATGTATTCAAAATGCGGCTTACTTGACCGTGCCAGAAGTGCCTTTGAAGAGACCCCTAAAGATAGCCCTATTACTTGGAACTTTATCATTTTTGGGTATGCCCAGCATGGGCAAGGCAAAATTGCCCTTGAGCTGTTCCATCAAATGACTGAATGTAAGGTGAAGCTTGACCACATAACATTTGTCGCAGTTCTGACAGCTTGTAGCCATATGGGATGGGTGGAAGAAGGTCGACGTATTTTGGAAATCATGGAATCTGATTATGGTATTTCACCAAGAATGGAGCATTATGCTTGCGCAATTGACTTGTTTGGGCGAGCTGGGCTCTTAGATGAAGCAAAGGCCTTGGTCAAATCAATGCCTTTTGAGCCAGATGCAATGGTGTTGAAAACACTACTGGGTGCATGTAGAAGTTGTGGGGATGTTGAATTGGCAAGTCAGGTTGCAAATCAGCTGCTAGAAATCGAACCTGAGGAGCATTGTACCTACGTCATCCTGTCTGAAATGTATGGTCGCCTTAAGAAATGGGAAGAGAAAGCTAGTCTAACGAGGTTGATGCGGGAAAGAGGGGTTAAAAAGGTTCCAGGGTGGAGTTGGATAGAGATTGACAATGAATCTCATTCCTTTATTGCGGAAGATGCTTCTCACTCAAAATGCAGAGAGATTTATGAGGCCCTGGAGGGACTTATGGAGGAAATGAGAATGCTAAAAGATGCATCTAATGTGAAGGTTTCTATTCATGGCTGGCCACTCATTGATGGATGTTGTGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_168571.p2 GENE.S_Transcript_168571~~S_Transcript_168571.p2 ORF type:complete len:258 (+),score=54.02,PPR|PF01535.16|9.8,PPR|PF01535.16|4.4e-06,PPR|PF01535.16|0.1,PPR|PF01535.16|0.064,PPR|PF01535.16|1.8e+02,PPR|PF01535.16|15,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|3.1e+03,PPR_3|PF13812.2|5.5e+02,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|1.4e+04,PPR_2|PF13041.2|4.9e+03,PPR_2|PF13041.2|7e-09,PPR_2|PF13041.2|28,PPR_2|PF13041.2|6.3,PPR_2|PF13041.2|1.4e+03,PPR_2|PF13041.2|6.1e+02,PPR_2|PF13041.2|3.8e+03,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|0.0051,PPR_1|PF12854.3|4.2e+02,PPR_1|PF12854.3|0.028,PPR_1|PF12854.3|2.4e+03,PPR_1|PF12854.3|6.6e+03,PPR_1|PF12854.3|1.7e+03,DYW_deaminase|PF14432.2|1e-05 S_Transcript_168571:1586-2359(+)
MYSKCGLLDRARSAFEETPKDSPITWNFIIFGYAQHGQGKIALELFHQMTECKVKLDHITFVAVLTACSHMGWVEEGRRILEIMESDYGISPRMEHYACAIDLFGRAGLLDEAKALVKSMPFEPDAMVLKTLLGACRSCGDVELASQVANQLLEIEPEEHCTYVILSEMYGRLKKWEEKASLTRLMRERGVKKVPGWSWIEIDNESHSFIAEDASHSKCREIYEALEGLMEEMRMLKDASNVKVSIHGWPLIDGCCD*

Click here to download the sequence:
Link to NCBI Protein BLAST