Transcript Information: S_Transcript_168682.p1


Annotated TAIR IDAT5G25560.2
Annotated Gene NameCHY-type/CTCHY-type/RING-type Zinc finger protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8899486-8901453 | Forward length=328
E-Value1.1E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.634718349017
Replicate 221.343350767596
Replicate 322.117918998811
Condition 2: 8 Hour
Replicate 180.279277317033
Replicate 290.865370743237
Replicate 393.218217605842
Condition 3: 24 Hour
Replicate 134.587732193441
Replicate 228.658225507773
Replicate 341.031514267743


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_168682.p1 GENE.S_Transcript_168682~~S_Transcript_168682.p1 ORF type:complete len:276 (-),score=35.53,zf-CHY|PF05495.8|4.1e-20,zf-CHY|PF05495.8|1.6e+04,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|7.1e+02,zf-RING_2|PF13639.2|1.4e+04,zf-RING_2|PF13639.2|4.2e-09,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|9e+03,zf-RING_5|PF14634.2|3e+03,zf-RING_5|PF14634.2|2.4e-08,zf-RING_UBOX|PF13445.2|3.6e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|9.7e-08,zf-C3HC4_2|PF13923.2|6.9e+03,zf-C3HC4_2|PF13923.2|6.5e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2.1e-07,zinc_ribbon_6|PF14599.2|1.5e+03,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|5.1e+03,zinc_ribbon_6|PF14599.2|2.6e-06 S_Transcript_168682:684-1511(-)
ATGGAAACAACTATGAAGCAAAACAGCTCAGTGCAGTATCTTGAACGACATGAACTGCAACAAGGGGTCACAGATACAGTGTACCTAGAGCTCAAAGCCTCACAAAATACCTTGGATAGTCCCAAGGATCTGCTGGACAGGGGTTACATGGAATACGGATGTCAGCATTACCGGCGCAGATGTCAAATCAGAGCTCCTTGTTGTAATGAGATATTTGACTGCCGTCATTGCCACAATGAAGAGATGAATAGTATCAAGGTTGACCAGACAAAGAGACATGAGATTCCAAGACACAGAGTTGAGCAGGTGATTTGTTCACTTTGTGGGACTGAGCAAGAGGTTCGGCAAGTGTGTATCAACTGTGGCGTTTGCATGGGCAAGTATTTCTGTGAGAGATGCAAATTTTTTGATGATGACACTTCCAAGAAGCAGTATCATTGTGAGGGTTGTGGGATCTGCAGGATTGGTGGCCGCGAAAATTTTTTTCACTGTTACAAATGCCGTTGTTGTTATTCTGTAGTATTGAAAAACAGCCATCCCTGTGTGGAAGGTGCTATGCATCATGACTGCCCTGTATGCTTTGAGTATTTATTCGAGTCAAGAAATGGTGTCACAGTTTTGCCATGCGGGCACACGATTCACAGTGACTGCTTGAAGGAAATGCAGGAGCACTATCAATATGCTTGTCCTCTTTGCTCAAAATCAGTTTGTGACATGTCTAAGGTGTGGGAGAAATTTGACATGGAAATTGCAGCAACACCAATGCCTGAGCCATACCAGAACAAGATGGTAAGTGATTATCTTTGCCTTTCACTAGAGCAGTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_168682.p1 GENE.S_Transcript_168682~~S_Transcript_168682.p1 ORF type:complete len:276 (-),score=35.53,zf-CHY|PF05495.8|4.1e-20,zf-CHY|PF05495.8|1.6e+04,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|7.1e+02,zf-RING_2|PF13639.2|1.4e+04,zf-RING_2|PF13639.2|4.2e-09,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|9e+03,zf-RING_5|PF14634.2|3e+03,zf-RING_5|PF14634.2|2.4e-08,zf-RING_UBOX|PF13445.2|3.6e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|9.7e-08,zf-C3HC4_2|PF13923.2|6.9e+03,zf-C3HC4_2|PF13923.2|6.5e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2.1e-07,zinc_ribbon_6|PF14599.2|1.5e+03,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|5.1e+03,zinc_ribbon_6|PF14599.2|2.6e-06 S_Transcript_168682:684-1511(-)
METTMKQNSSVQYLERHELQQGVTDTVYLELKASQNTLDSPKDLLDRGYMEYGCQHYRRRCQIRAPCCNEIFDCRHCHNEEMNSIKVDQTKRHEIPRHRVEQVICSLCGTEQEVRQVCINCGVCMGKYFCERCKFFDDDTSKKQYHCEGCGICRIGGRENFFHCYKCRCCYSVVLKNSHPCVEGAMHHDCPVCFEYLFESRNGVTVLPCGHTIHSDCLKEMQEHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNKMVSDYLCLSLEQW*

Click here to download the sequence:
Link to NCBI Protein BLAST