Transcript Information: S_Transcript_16879.p1


Annotated TAIR IDAT4G38495.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:18007466-18008025 | Reverse length=124
E-Value4.2E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.915942007997
Replicate 219.611368495569
Replicate 315.911380150557
Condition 2: 8 Hour
Replicate 117.701467779581
Replicate 220.178530145636
Replicate 316.021715520084
Condition 3: 24 Hour
Replicate 119.132120181305
Replicate 220.145610290087
Replicate 318.957745794695


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_16879.p1 GENE.S_Transcript_16879~~S_Transcript_16879.p1 ORF type:complete len:153 (+),score=23.83,YL1_C|PF08265.7|1.2e-14 S_Transcript_16879:51-461(+)
ATGGAGTCAGCACCAAAAAAAAAAAAAAAGAATAACATGGAGAGAGAGGTGATAGAGGCAGAGCTGGTCTTGCCCACCCACATGAAGTTCAAGAAGATTCAAATGTATGAGAAATACCCTAAAGGTCAATCTAGGTCTCGCCATTGGAAACATCTTAAACAAATTCTCCAGGCTGAGATTTCTCAGAACTTCCCTCCTCATGAACCCAATTATGTCAATATTGAGTCACCTCCTTCAATGCATCCTCCAATGAGAATTTGTGATATTACAGGATATGAGGCACCTTATCATGATCCAAGGACCAAACTGCGTTATGCCAATACTGAAGTCTTTAAGCTCATAAGGTCACTTCCTAATGAGTATGTGCAACGGTACTTGGCTCTTAGAAATGCAGCTGTCGTCCTCAAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_16879.p1 GENE.S_Transcript_16879~~S_Transcript_16879.p1 ORF type:complete len:153 (+),score=23.83,YL1_C|PF08265.7|1.2e-14 S_Transcript_16879:51-461(+)
MESAPKKKKKNNMEREVIEAELVLPTHMKFKKIQMYEKYPKGQSRSRHWKHLKQILQAEISQNFPPHEPNYVNIESPPSMHPPMRICDITGYEAPYHDPRTKLRYANTEVFKLIRSLPNEYVQRYLALRNAAVVLK*

Click here to download the sequence:
Link to NCBI Protein BLAST