Transcript Information: S_Transcript_169127.p1


Annotated TAIR IDAT3G47070.1
Annotated Gene NameLOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:17337205-17337507 | Reverse length=100
E-Value6E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11123.6057952688
Replicate 21111.438325324
Replicate 31204.023027256
Condition 2: 8 Hour
Replicate 1505.54870256396
Replicate 2556.01227490843
Replicate 3607.59943585942
Condition 3: 24 Hour
Replicate 1943.7390491487
Replicate 21099.0908990144
Replicate 31093.1095208236


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_169127.p1 GENE.S_Transcript_169127~~S_Transcript_169127.p1 ORF type:complete len:109 (-),score=45.12,TSP9|PF11493.4|1.8e-27 S_Transcript_169127:405-701(-)
ATGGCTTCATTACCCTTGTTCAGCATGGGAGCAGCAGCTGGTGGCAGAGTATTCACAGCAAGAGCAGCAAAGGGAGCAGCTGGAAGCACTGAAGAAAAGAGCTTTTTGGATTGGGTTTTAGGGAACCTAACTAAGGAGGATCAATTTTATGAAACTGATCCCATCCTTCAGAAGGTTGAAGGGAAGGCTGGCACCACCAGTGGCCGAAAGGGTGGCACCGTATCAGTTCCTGCCAAGAAGAAGAATAGTGGTGGTGGTGGTGGTGGTGCTTTTGGAGGCCTTTTTGCCAAAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_169127.p1 GENE.S_Transcript_169127~~S_Transcript_169127.p1 ORF type:complete len:109 (-),score=45.12,TSP9|PF11493.4|1.8e-27 S_Transcript_169127:405-701(-)
MASLPLFSMGAAAGGRVFTARAAKGAAGSTEEKSFLDWVLGNLTKEDQFYETDPILQKVEGKAGTTSGRKGGTVSVPAKKKNSGGGGGGAFGGLFAKK*

Click here to download the sequence:
Link to NCBI Protein BLAST