Transcript Information: S_Transcript_169539.p1


Annotated TAIR IDAT3G01610.1
Annotated Gene Namecell division cycle 48C
Annotated Gene Symbol(s)CDC48C, emb1354
Annotation TypeHomolog
Chromosome Positionchr3:231787-235057 | Forward length=820
E-Value6E-138
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.70653985580125
Replicate 21.3016395019183
Replicate 31.387285457616
Condition 2: 8 Hour
Replicate 11.5726689024434
Replicate 21.2868762491878
Replicate 31.194693523583
Condition 3: 24 Hour
Replicate 12.1587126753242
Replicate 21.6045176337237
Replicate 31.1160196639432


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_169539.p1 GENE.S_Transcript_169539~~S_Transcript_169539.p1 ORF type:complete len:678 (+),score=153.30,AAA|PF00004.25|1.7e-40,AAA|PF00004.25|6.1e-36,RuvB_N|PF05496.8|1.7e-06,RuvB_N|PF05496.8|1.8e+03,RuvB_N|PF05496.8|0.00013,AAA_16|PF13191.2|1.2e-05,AAA_16|PF13191.2|2.9e+02,AAA_16|PF13191.2|0.0024,AAA_16|PF13191.2|3e+03,AAA_2|PF07724.10|4.3e+03,AAA_2|PF07724.10|4.5e-06,AAA_2|PF07724.10|0.0051,AAA_22|PF13401.2|0.0057,AAA_22|PF13401.2|13,AAA_22|PF13401.2|0.032,AAA_22|PF13401.2|3e+02,AAA_17|PF13207.2|0.0018,AAA_17|PF13207.2|0.0006,AAA_5|PF07728.10|0.0003,AAA_5|PF07728.10|0.015,AAA_14|PF13173.2|0.00073,AAA_14|PF13173.2|0.053,TIP49|PF06068.9|0.0013,TIP49|PF06068.9|0.017,NACHT|PF05729.8|0.0024,NACHT|PF05729.8|2.7e+02,NACHT|PF05729.8|0.95,AAA_33|PF13671.2|0.028,AAA_33|PF13671.2|0.013,RNA_helicase|PF00910.18|0.019,RNA_helicase|PF00910.18|0.037,AAA_19|PF13245.2|0.029,AAA_19|PF13245.2|0.019,Mg_chelatase|PF01078.17|0.0041,Mg_chelatase|PF01078.17|0.063,AAA_18|PF13238.2|0.0079,AAA_18|PF13238.2|0.19,AAA_28|PF13521.2|0.0015,AAA_28|PF13521.2|0.61,IstB_IS21|PF01695.13|0.0049,IstB_IS21|PF01695.13|0.12,AAA_25|PF13481.2|0.41,AAA_25|PF13481.2|1.7,AAA_25|PF13481.2|6.9e+03,AAA_25|PF13481.2|1.5,AAA_25|PF13481.2|4.4e+03,TsaE|PF02367.13|0.038,TsaE|PF02367.13|0.37,Viral_helicase1|PF01443.14|3.8e+03,Viral_helicase1|PF01443.14|0.0018,Viral_helicase1|PF01443.14|7.8,Zeta_toxin|PF06414.8|3.3e+03,Zeta_toxin|PF06414.8|0.23,Zeta_toxin|PF06414.8|4e+03,Zeta_toxin|PF06414.8|0.079,Arch_ATPase|PF01637.14|0.072,Arch_ATPase|PF01637.14|1.2,Arch_ATPase|PF01637.14|7.7e+02 S_Transcript_169539:311-2344(+)
ATGATACTTAGCCTGATTTTGTGGTCCACTTCATTGCTTTCTGTGTTTTTTCTTATAATTTTGGTGGGTTTAGTTTGTAACCCTGAAACGAGGAAGAGATACAGCGGCCAGAATGGCCATGGCAATGGTCGTAATCAGCCTTTGCTTTTACGTCGGTTAAAGCAGAACCGTAGTCATTACCATGAAGTGGAGGATGCTGTCAAATATCTTCAGTCTCAGTATCCAGAATACAAGAGGATGAGTGCTTCAGTCCTCAATAGAAGTGTTGAAAAAGATATTGTCAAATCCTCCACTCAAAACAAAAGCAAGAGCAGGCGCAATGGCGGTGATAAGAATGTCTGTGAATGTCGACAATCACAGACTTCAGTGTTTGAGCTAAATTCAGAGTCAGAATCGACAGGTGGGCAGGTCTCGAATCCTAAGACTGATCTGATGAAATCGATGCTCAGGAAAGGGTATAGTCATAATGGTGGTGGTGGGGAAAAGAATGTGCAAGTATTAGAAAATGAAGAAAAGCAAGATAATCCAATGAAAGGTGGAGTTATGCTTGAGACAGTACACAAGGGACTGGGGAAAAAGGATTTGAATCAACAAGAAGAGGCAAGAGGGGGGCGCGGGTACCCCATGTTTAAGGACTTTGGTGGTATGGATGAAGTGGTTGAAGAATTGATATACAATGTTGTTATCCCACTATGTCATCCAGAACTCCTGAACCGGCTAAGAGGGTTGCGTGCAGGGCCACCGACGGGAATTCTACTACATGGACCTCCTGGTTGTGGGAAGACCATGTTGGCTCAAGCTATTGCCAATGAGGCTGGTGTTCCTTTGTATCAGGTTGCAGCCACAGAGTTTGTATCTGGAGTTGCAGGTCAGTCAGAAGAGAACATCCGTGAGCTTTTCTCAAAAGCTTGCAAGACATCTCCTTCAATTATCTTCATTGATGAGATTGATGCCATTGCTGAAAAAAGAGAAAACTCACAAAAAGCGATGCATGGGCGAATTGTCACGCAATTATTGAAGTGCATGGATAGTATCCAGGAGGGTGTTTCTCCAACAGGTCTAGGAGGTTCAGAATGCAAGGATAGACTGCATGCATCTCCAGACAATTCAGATGCTGATTCTAGACCTGGCCATGTTCTTGTTATTGGAGCTACCAACCGACCAAATTCTCTTGATCATGCATTAAGACGACCTGGACGCTTTACTCGGGAGATTAAGCTTGGAGCTCCGGATGTAAATGCAAGGTTTGAGATACTTTCAGTGTTGACGCGTGATCTTGGAGTGCAAGATGGTTTGGACATTAGAAAATTGGCTAGGGATACACAAGGTTTTGTTGGTGCGGACTTAGAAGAATGTGTTAGTAAAGCTTGTTTACTTGCTGTGCGAAAGATGATTAACTCAAAAAAGTCTGAGGGTGTAGCGGAAAATGCACTTATGCTCCATGCTGACAATTGGTGGAAGCAACTACAATTTAAACATGGACAATTGAAAACTCTTGCGCCAACAATGGCTGATTTTGAGGTGGCAGTTAAACATGTTCAACCCTCCTTGAAAAGAGAAGGTTTCTCTACAGTTCCAAGTGCAAAATGGGAGGATGTAGGAGGACTTGATAAAATAAGGAAGCTGTTCCAGAGTAGCATAATTCATCCAGTAAAATGCCCTGAAGATTATGAGGCGGTTCGAAAGGATTTACCAGCAGGATTTTTGCTTTATGGTCCCCCTGGTTGTGGTAAAACGTTGATTGCCAAGGCTGTTGCCAATGAGGCTGGGGCTAGTTTCATACATATCAAGGGCCCTGAAATTCTGGACAAATATGTTGGTGAAAGTGAATTGGCTGTTCGTCAAATATTCAGTCGCGCAAGGATGTGCTCTCCATGTATTATTTTCTTTGATGAGGTGGATGCTTTGACAGCAAAGCATGGAGGATATAGCGGTGTTACTGAAAGGGTTATGAAGCAGCTTCTGATTGAGCTAGATGGCGCAGAAGAAAGGCGCGGTGTATATGTCATTGGTGCAACAAACCAGAGTCGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_169539.p1 GENE.S_Transcript_169539~~S_Transcript_169539.p1 ORF type:complete len:678 (+),score=153.30,AAA|PF00004.25|1.7e-40,AAA|PF00004.25|6.1e-36,RuvB_N|PF05496.8|1.7e-06,RuvB_N|PF05496.8|1.8e+03,RuvB_N|PF05496.8|0.00013,AAA_16|PF13191.2|1.2e-05,AAA_16|PF13191.2|2.9e+02,AAA_16|PF13191.2|0.0024,AAA_16|PF13191.2|3e+03,AAA_2|PF07724.10|4.3e+03,AAA_2|PF07724.10|4.5e-06,AAA_2|PF07724.10|0.0051,AAA_22|PF13401.2|0.0057,AAA_22|PF13401.2|13,AAA_22|PF13401.2|0.032,AAA_22|PF13401.2|3e+02,AAA_17|PF13207.2|0.0018,AAA_17|PF13207.2|0.0006,AAA_5|PF07728.10|0.0003,AAA_5|PF07728.10|0.015,AAA_14|PF13173.2|0.00073,AAA_14|PF13173.2|0.053,TIP49|PF06068.9|0.0013,TIP49|PF06068.9|0.017,NACHT|PF05729.8|0.0024,NACHT|PF05729.8|2.7e+02,NACHT|PF05729.8|0.95,AAA_33|PF13671.2|0.028,AAA_33|PF13671.2|0.013,RNA_helicase|PF00910.18|0.019,RNA_helicase|PF00910.18|0.037,AAA_19|PF13245.2|0.029,AAA_19|PF13245.2|0.019,Mg_chelatase|PF01078.17|0.0041,Mg_chelatase|PF01078.17|0.063,AAA_18|PF13238.2|0.0079,AAA_18|PF13238.2|0.19,AAA_28|PF13521.2|0.0015,AAA_28|PF13521.2|0.61,IstB_IS21|PF01695.13|0.0049,IstB_IS21|PF01695.13|0.12,AAA_25|PF13481.2|0.41,AAA_25|PF13481.2|1.7,AAA_25|PF13481.2|6.9e+03,AAA_25|PF13481.2|1.5,AAA_25|PF13481.2|4.4e+03,TsaE|PF02367.13|0.038,TsaE|PF02367.13|0.37,Viral_helicase1|PF01443.14|3.8e+03,Viral_helicase1|PF01443.14|0.0018,Viral_helicase1|PF01443.14|7.8,Zeta_toxin|PF06414.8|3.3e+03,Zeta_toxin|PF06414.8|0.23,Zeta_toxin|PF06414.8|4e+03,Zeta_toxin|PF06414.8|0.079,Arch_ATPase|PF01637.14|0.072,Arch_ATPase|PF01637.14|1.2,Arch_ATPase|PF01637.14|7.7e+02 S_Transcript_169539:311-2344(+)
MILSLILWSTSLLSVFFLIILVGLVCNPETRKRYSGQNGHGNGRNQPLLLRRLKQNRSHYHEVEDAVKYLQSQYPEYKRMSASVLNRSVEKDIVKSSTQNKSKSRRNGGDKNVCECRQSQTSVFELNSESESTGGQVSNPKTDLMKSMLRKGYSHNGGGGEKNVQVLENEEKQDNPMKGGVMLETVHKGLGKKDLNQQEEARGGRGYPMFKDFGGMDEVVEELIYNVVIPLCHPELLNRLRGLRAGPPTGILLHGPPGCGKTMLAQAIANEAGVPLYQVAATEFVSGVAGQSEENIRELFSKACKTSPSIIFIDEIDAIAEKRENSQKAMHGRIVTQLLKCMDSIQEGVSPTGLGGSECKDRLHASPDNSDADSRPGHVLVIGATNRPNSLDHALRRPGRFTREIKLGAPDVNARFEILSVLTRDLGVQDGLDIRKLARDTQGFVGADLEECVSKACLLAVRKMINSKKSEGVAENALMLHADNWWKQLQFKHGQLKTLAPTMADFEVAVKHVQPSLKREGFSTVPSAKWEDVGGLDKIRKLFQSSIIHPVKCPEDYEAVRKDLPAGFLLYGPPGCGKTLIAKAVANEAGASFIHIKGPEILDKYVGESELAVRQIFSRARMCSPCIIFFDEVDALTAKHGGYSGVTERVMKQLLIELDGAEERRGVYVIGATNQSR*

Click here to download the sequence:
Link to NCBI Protein BLAST