Transcript Information: S_Transcript_169588.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.7626766581725
Replicate 30.2422255409657
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_169588.p1 GENE.S_Transcript_169588~~S_Transcript_169588.p1 ORF type:internal len:88 (+),score=10.53,UBN2_3|PF14244.2|2.7e-19,Retrotrans_gag|PF03732.13|4.7e-08 S_Transcript_169588:3-263(+)
AGCATGGTAATTGCTTGGCTCCTAAACTCAATGTCAGATTCTGTTAGACGTTCTGTGTTGTACATTGATTCCGCTTGTGCTATGTGGTTGCATCTTGAAAATAGATTTTCAGTGAGTAATGGATCACGAAAGTATAAGATCAATAAAGAAATATATGACTTGAGGCAAAAAGGAACTAGCATTAATGAGTTTTTCACTAGAATGAGGTGTCTTTGGGAAGAGCTGGATTCTATGAGCACTTTGCCTAAAATTACTCAGTTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_169588.p1 GENE.S_Transcript_169588~~S_Transcript_169588.p1 ORF type:internal len:88 (+),score=10.53,UBN2_3|PF14244.2|2.7e-19,Retrotrans_gag|PF03732.13|4.7e-08 S_Transcript_169588:3-263(+)
SMVIAWLLNSMSDSVRRSVLYIDSACAMWLHLENRFSVSNGSRKYKINKEIYDLRQKGTSINEFFTRMRCLWEELDSMSTLPKITQF

Click here to download the sequence:
Link to NCBI Protein BLAST