Transcript Information: S_Transcript_169589.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1957434379789
Replicate 25.7641522267381
Replicate 35.4829755924218
Condition 2: 8 Hour
Replicate 113.25632371065
Replicate 29.8758611112307
Replicate 310.177837144721
Condition 3: 24 Hour
Replicate 13.5424135390153
Replicate 24.7981943427402
Replicate 35.4534150065116


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_169589.p1 GENE.S_Transcript_169589~~S_Transcript_169589.p1 ORF type:complete len:222 (+),score=39.17,UBN2_3|PF14244.2|4.5e-39,Retrotrans_gag|PF03732.13|4e-09 S_Transcript_169589:387-1052(+)
ATGTCTAGTGAGAGAAGAAACAATAATGTTCACTTTAGTGATTTGCAAAATCCTCTATTCTTATATCCTTCTGATGGACCTTCCTCTATCACCATTGAAGAAAAGCTGGTAGGTGCTGTGAATTATAGATCCTGGAAGCGTAATTTGGAAATTGCTTTGGCCACGAAACGAAAGCTTGGATTCATCAAAGGAACTATAAAAAGATGTGATGATGATCCTGTTAAAGCTGAACAATGGGACACTTGCAACAGTATGGTAATTTCCTGGTTATTGAATTCTATGACTGATTCAATACGTCAATCTGTATTGTCCATTGATTCTGCTTTTGCTATGTGGTTGCATCTGGAGAATAGATTTTCTATTAATAATGGATCAAGGAAATATCAGATTAACAAGGAGATATATGACCTAAGACAGAATGGCATGAACATTAATGAATTTTTCACTAAGATGAGATGTCTTTGGGAGGAGCTAGATTCTATGAGAAATTTGCCTAAAATTACTCAGTTTACTGATGAGATTAAGGAGTTCTTAAAGGCTTTGGACAAACAACAAGAAGAGCATAGGTTATTTCAATTTTTGAATGGTCTTGATAACATTTACAATACTCAGAGGAGCAATTTGCTGTTAATCTGCAACAAGAAGAGACTCAGAGAGATGTGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_169589.p1 GENE.S_Transcript_169589~~S_Transcript_169589.p1 ORF type:complete len:222 (+),score=39.17,UBN2_3|PF14244.2|4.5e-39,Retrotrans_gag|PF03732.13|4e-09 S_Transcript_169589:387-1052(+)
MSSERRNNNVHFSDLQNPLFLYPSDGPSSITIEEKLVGAVNYRSWKRNLEIALATKRKLGFIKGTIKRCDDDPVKAEQWDTCNSMVISWLLNSMTDSIRQSVLSIDSAFAMWLHLENRFSINNGSRKYQINKEIYDLRQNGMNINEFFTKMRCLWEELDSMRNLPKITQFTDEIKEFLKALDKQQEEHRLFQFLNGLDNIYNTQRSNLLLICNKKRLREMC*

Click here to download the sequence:
Link to NCBI Protein BLAST