Transcript Information: S_Transcript_169661.p1


Annotated TAIR IDAT3G02330.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:473881-476592 | Reverse length=903
E-Value1.3E-201
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46792090083834
Replicate 20.7273447106873
Replicate 30.44586834487825
Condition 2: 8 Hour
Replicate 11.7341526191954
Replicate 22.3601071092459
Replicate 32.0144647187125
Condition 3: 24 Hour
Replicate 10.33607513062453
Replicate 20.84677977318221
Replicate 31.1086612925326


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_169661.p1 GENE.S_Transcript_169661~~S_Transcript_169661.p1 ORF type:5prime_partial len:455 (+),score=113.59,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|4.3e-08,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|1.1e-12,PPR_2|PF13041.2|3.2e+02,PPR_2|PF13041.2|2.3e-11,PPR_2|PF13041.2|0.058,PPR_2|PF13041.2|0.18,PPR_2|PF13041.2|7.3e+03,PPR_2|PF13041.2|4.6e+02,PPR_2|PF13041.2|7.7e+03,PPR|PF01535.16|0.071,PPR|PF01535.16|0.18,PPR|PF01535.16|0.00061,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|0.4,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|0.02,PPR|PF01535.16|0.0043,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|5.9,PPR|PF01535.16|1.1e+03,PPR_1|PF12854.3|4.8,PPR_1|PF12854.3|14,PPR_1|PF12854.3|5.7,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|36,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|0.035,PPR_3|PF13812.2|0.4,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|5.2e+03,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|5.8,PPR_3|PF13812.2|36,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.49,PPR_3|PF13812.2|2e+03,PPR_3|PF13812.2|5.4e+02,DYW_deaminase|PF14432.2|1.9e-06 S_Transcript_169661:2-1366(+)
TTGGACATGTATGGAAAATGTGGATCTATGAATGCTGCTCAAAATGTTTTTGATGAGATGCATGAAAGAGATGCTGTGTCTTGGAATGCAATCATAGCAGCTTACGAGCAGAATGGGTTTCAAAAGGAAACTCTATGCTTATTTGTCTCAATGCTGGCTTCTGGGATGGAACCTGATGAGTTCACGTATGGAAGCATTCTGAAAGCTTCTACATCTAGCCAACCTTCACAATGTGGTGTGGAGATTCATGGAAGAGTTATCAAATCTGGAATGGGCTTCCATTCTTTTGTGGGAAGTACATTGGTTGATATGTACTGTAAGTATGGCATGATAGATGAGGCTATGAAGCTTCATTATAGACTGGAAGAGCAGAATGTGGTTTCTTGGAATGCAATTATTTCAGGATATCTTTTGCAAGATCAGAATGAGGAAGCACAGATATTCTTTGCTTCGATGCTGGAAATGGGTGTACAACCTGATAATTTTACTTATGCAACAGTTCTTGATGCATGTGCTAACCTGGCAACTGTGGGACTTGGCAAGCAAATCCATGCTCAAATCATCAAGCATGAACTTCAATCAGATGTGTATATTGTGAGTACACTTGTTGATATGTATTCAAAGTGTGGCAATATGCAAGACTCTCAGATAATGTTTGAAAGAGCACGGAAACGGGATTTTGTGACATGGAATGCAATGATATGTGGATATGCCTATCACGGTTTTGCAGAAGAGGCTCTCAAAGTCTTTGAGGATATGAAATTGGAGAATGTGAAGCTGAATCATGCTACTTTTGTGGCAGTTCTCAGAGCTTGCGGTCACATGGGTTTGGTTGAAAAGGGCTGGGATTACTTTTGCTCAATGAGCAGCTATGGATTAGATCCACAATTGGATCACTATTCATGCATGGTGGATATGCTAGGGAAATCTGGGCAGGTTGGGAAGGCTTTGAAACTTATTGAGAATATGCCATTTAAAGCAGATGATGTTATTTGGAGAACATTGCTCAGTGTTTGCAAGATGTATGGCAATGTGGAGGTCGCAGAAAAGGCTGCCAGTTCTATCCTGCAGTTGGATCCTCAAGACTCTTCTGTCTACATTCTCCTAGCAAATATATATGCGAATGCAGGGCTTTGGAATGAGGTTTCTAGGATGAGGAGGGCAATGAGGGAAAATAAGGTGAAGAAGGAGCCAGGCTGCAGCTGGATAGAGGTGATGGGAGATGTTCACACATTCTTGGCTAATGAGAAGGCCCATCCTAGACGTACAGAGATATTCGAGGAGCTAAATTCACTATATGATGAGATGAGGTTGATCGGACATCTATCACATGGAGGCTTAACTTTTGATGTTGAAATAGGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_169661.p1 GENE.S_Transcript_169661~~S_Transcript_169661.p1 ORF type:5prime_partial len:455 (+),score=113.59,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|4.3e-08,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|1.1e-12,PPR_2|PF13041.2|3.2e+02,PPR_2|PF13041.2|2.3e-11,PPR_2|PF13041.2|0.058,PPR_2|PF13041.2|0.18,PPR_2|PF13041.2|7.3e+03,PPR_2|PF13041.2|4.6e+02,PPR_2|PF13041.2|7.7e+03,PPR|PF01535.16|0.071,PPR|PF01535.16|0.18,PPR|PF01535.16|0.00061,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|0.4,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|0.02,PPR|PF01535.16|0.0043,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|5.9,PPR|PF01535.16|1.1e+03,PPR_1|PF12854.3|4.8,PPR_1|PF12854.3|14,PPR_1|PF12854.3|5.7,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|36,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|0.035,PPR_3|PF13812.2|0.4,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|5.2e+03,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|5.8,PPR_3|PF13812.2|36,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|0.49,PPR_3|PF13812.2|2e+03,PPR_3|PF13812.2|5.4e+02,DYW_deaminase|PF14432.2|1.9e-06 S_Transcript_169661:2-1366(+)
LDMYGKCGSMNAAQNVFDEMHERDAVSWNAIIAAYEQNGFQKETLCLFVSMLASGMEPDEFTYGSILKASTSSQPSQCGVEIHGRVIKSGMGFHSFVGSTLVDMYCKYGMIDEAMKLHYRLEEQNVVSWNAIISGYLLQDQNEEAQIFFASMLEMGVQPDNFTYATVLDACANLATVGLGKQIHAQIIKHELQSDVYIVSTLVDMYSKCGNMQDSQIMFERARKRDFVTWNAMICGYAYHGFAEEALKVFEDMKLENVKLNHATFVAVLRACGHMGLVEKGWDYFCSMSSYGLDPQLDHYSCMVDMLGKSGQVGKALKLIENMPFKADDVIWRTLLSVCKMYGNVEVAEKAASSILQLDPQDSSVYILLANIYANAGLWNEVSRMRRAMRENKVKKEPGCSWIEVMGDVHTFLANEKAHPRRTEIFEELNSLYDEMRLIGHLSHGGLTFDVEIG*

Click here to download the sequence:
Link to NCBI Protein BLAST