Transcript Information: S_Transcript_169664.p1


Annotated TAIR IDAT3G16610.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:5656371-5658335 | Reverse length=654
E-Value1.3E-148
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0554757051562
Replicate 22.3766826149355
Replicate 32.0616879768253
Condition 2: 8 Hour
Replicate 12.3839359094356
Replicate 22.6373317502117
Replicate 32.4261940363393
Condition 3: 24 Hour
Replicate 12.0868079757275
Replicate 21.6583276763181
Replicate 31.6917224905871


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_169664.p1 GENE.S_Transcript_169664~~S_Transcript_169664.p1 ORF type:5prime_partial len:492 (+),score=85.49,PPR|PF01535.16|14,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|5.9e+03,PPR|PF01535.16|0.23,PPR|PF01535.16|5.2e-06,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|0.072,PPR|PF01535.16|0.47,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|3.5e+02,PPR_2|PF13041.2|4.3e+03,PPR_2|PF13041.2|6.9e-05,PPR_2|PF13041.2|0.14,PPR_2|PF13041.2|2.1e-08,PPR_2|PF13041.2|0.00015,PPR_2|PF13041.2|4.5e-07,PPR_2|PF13041.2|3.6e+02,PPR_2|PF13041.2|68,PPR_2|PF13041.2|1.2e+03,PPR_1|PF12854.3|4.6e+03,PPR_1|PF12854.3|4.4,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|0.0006,PPR_1|PF12854.3|0.43,PPR_1|PF12854.3|2.6e+02,PPR_1|PF12854.3|6.3,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|4.3e+03,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|4.8e+02,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|1.4e+03,DYW_deaminase|PF14432.2|5e-07 S_Transcript_169664:2-1477(+)
GCTGTACATGCATATTCAATGAGACGGAACTATAGTCATGAAGTTGTGGTGGGCACAGGGCTTTTGGACATGTATGGAAAATGTGGGTGTATATCCTATGCTAGGACAATCTTTGACCTTTTGGTTATTAGGACTGAAATCACTTGGAGTGCAATGATTGGAGCATATGTTTTATGTGATCATATGATAGAAGCTTTGGAATTTTTTGACCGTATGTTGCTTCAGGATTCTGGAAGTCCATCATCTGTTACTTTTGGATGTGCTCTCCGAGCTTGTACTAAGTTGATTGATATAAGAAATGGAAGAAGGATCCATGGTCACATTCTCAAATCAGGGCATATTTCAGATTTAATGGTTAGCAACACTATTCTTTCAATGTATGCAAAATGTGGTATATTAGATGATGCTGTCAGGTTTTTTCAAGGAATGAATCCAAGAGATAGGGTGTCTTACGGTGCAATGATTTCTGGATGTGTACAAAATGGTAACAGTCTGCTAGCCTTGAAGTTCTTCCGGAATATGCTAGCATCAGGAATAGATCCAGATGAGACTACTATGCTTGCGCTGCTACCAGCTTGTTCACATTTAGCTGCCCTGAAATATGGAGCCTGTGCCCATGGGTACTCTATAGTCCATGGGTTTGTGGCTGATACATCAATCTGTAATGCGCTGATTGATATGTATGCCAAGTGCGGAAAGGTGAAAACTTCGAGGGAAGTTTTTAATAAGATGCATAAGCGAGATATTATCTCATGGAATTCTATGATTGCTGGATATGGTATTCATGGCCTAGGCTTAGATGCACTTTCTCTGTTCCACAAATTAAGAACTGTCGGACTGGCACCAGATGATATAACATTTATTAGTCTTTTGATTGCTTGTAGTCACTCTGGTCTTGTTGAAGAAGGGAAATACTGGTTCGATGCAATGATCCGAGAGTTTCATATTGTCCCTAGAATTGATCACTACATTTGCATGGTTGACCTATTGGGTCGAGCAGGGCATCTGGAAGAGGCCAAAAGATTCATTGAGGAAACTTCATATACGTCGAATGTTCATGTTTGGAGTGCGCTGCTTGCTACATGCAAGATTCACAAGAATGTTGAGTTGGCTGAAGAAGCATCAAAGATGATCCAAAATTTAGGTCCTGAAAGTTCTGGGAATTTTGTCCTTTTGTCCAATATAGTATATAGTTCTGCTGGAAGATGGGAGGACGCAGCTTCTGTTAGAATCATGCAGAGAGATCAGGGTTTCAAGAAAAGGCCAGGATGTAGCTGGGTTGAGATAAATGGCATTTTTCATGCATTTGTTGGTGGAGATCGTTCTCACCCACAAACAGAACAGATATACAAGAAATTGGAAGAACTGCTAGCTGAGGTGAAAAAACTGGATATCAAACAGTTCCCACCTTTGTATTTCAGGATGTTGAAGAGGAAGAGAAAGAACACATTCTTCTTCAACATAGTGAGAAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_169664.p1 GENE.S_Transcript_169664~~S_Transcript_169664.p1 ORF type:5prime_partial len:492 (+),score=85.49,PPR|PF01535.16|14,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|5.9e+03,PPR|PF01535.16|0.23,PPR|PF01535.16|5.2e-06,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|0.072,PPR|PF01535.16|0.47,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|3.5e+02,PPR_2|PF13041.2|4.3e+03,PPR_2|PF13041.2|6.9e-05,PPR_2|PF13041.2|0.14,PPR_2|PF13041.2|2.1e-08,PPR_2|PF13041.2|0.00015,PPR_2|PF13041.2|4.5e-07,PPR_2|PF13041.2|3.6e+02,PPR_2|PF13041.2|68,PPR_2|PF13041.2|1.2e+03,PPR_1|PF12854.3|4.6e+03,PPR_1|PF12854.3|4.4,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|0.0006,PPR_1|PF12854.3|0.43,PPR_1|PF12854.3|2.6e+02,PPR_1|PF12854.3|6.3,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|4.3e+03,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|4.8e+02,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|1.4e+03,DYW_deaminase|PF14432.2|5e-07 S_Transcript_169664:2-1477(+)
AVHAYSMRRNYSHEVVVGTGLLDMYGKCGCISYARTIFDLLVIRTEITWSAMIGAYVLCDHMIEALEFFDRMLLQDSGSPSSVTFGCALRACTKLIDIRNGRRIHGHILKSGHISDLMVSNTILSMYAKCGILDDAVRFFQGMNPRDRVSYGAMISGCVQNGNSLLALKFFRNMLASGIDPDETTMLALLPACSHLAALKYGACAHGYSIVHGFVADTSICNALIDMYAKCGKVKTSREVFNKMHKRDIISWNSMIAGYGIHGLGLDALSLFHKLRTVGLAPDDITFISLLIACSHSGLVEEGKYWFDAMIREFHIVPRIDHYICMVDLLGRAGHLEEAKRFIEETSYTSNVHVWSALLATCKIHKNVELAEEASKMIQNLGPESSGNFVLLSNIVYSSAGRWEDAASVRIMQRDQGFKKRPGCSWVEINGIFHAFVGGDRSHPQTEQIYKKLEELLAEVKKLDIKQFPPLYFRMLKRKRKNTFFFNIVRS*

Click here to download the sequence:
Link to NCBI Protein BLAST