Transcript Information: S_Transcript_16972.p1


Annotated TAIR IDAT5G47020.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19082005-19089800 | Forward length=1421
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7199114623876
Replicate 28.2061083424991
Replicate 38.1651238259441
Condition 2: 8 Hour
Replicate 112.926974053243
Replicate 211.027565030908
Replicate 39.6291666786981
Condition 3: 24 Hour
Replicate 19.3902073177071
Replicate 28.1088025974576
Replicate 37.7905928664451


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_16972.p1 GENE.S_Transcript_16972~~S_Transcript_16972.p1 ORF type:3prime_partial len:777 (+),score=194.31 S_Transcript_16972:515-2842(+)
ATGCGAATGCCTCCTGCGCTCCCTCATTGGTATCTTCATTGCTGTCTTTTCTTGGTGCAGCTTTTGCTACTGGTGTTTAGTGGTGTTTGTGGCGAGTACACAAGTGGGGAAAATGGCACAGAAGTTAGGTTTGGTGATAAAGCTGGGCAACTTCCTAGTGACATTTCTTCTGAAAGCAGAATTTTTAGATATGAGGACATTTCAGTATATATCTCCTCATCAGTAAACTGGGTGTCCTGTGAGGACCTTGCGGGTGTTGGATCATTCAATACTACATGCCTTATCAATTCAAATTTACGTTTGAATTCTAGTATTTATGCACTTGGTATAGGGAACTTAGAGATACGTCCTCATGTTTCAATTGTTTGCCCCGTAGAAGGTTGCTCTATCAGCTTTGATGTATCTGGGAATGTGAAAGTGGGACCACATGCTTCTATCATTGCTGGTTCTGTTGTTATTGCTTCCCATAGCTTGAGTGTGGGGCATAATGCTTCTATAAATACCACATCTCTCGGAGGAAGCCCACCTTCACAAACTAGTGGCACTCCTGTTGGCTATGATGGAGCTGGTGGAGGACATGGAGGCAGGGGTGCCTCTTGCTTGATAAAGGAGAAACCAAATACTTGGGGTGGGGATGTCTACTCATGGTCAACTTTGTCTGAGCCTGAGAGCTATGGGAGCAGGGGAAGTGGTAAGTCTGCCCTAAATCCTTTTGGAGGAAATGGTGGGGGACGTATAAAGCTTGTAGCAAAAGAAGAACTGTACTTGAATGGTTCTGTAACTGCTGAGGGCGGTGATGGAGGTACTGATGGGGGAGGAGGCTCTGGTGGGAGTATCATCATAGATGCGTATAAGCTGAAAGGTTTTGGTGCTATCAGTGCAGCTGGTGGCAGAGGATGGGCAGGAGGTGGAGGTGGAAGAATATCACTGAAGTGTTACAGCATACAGGATGTTAAGGTCACTGTGCATGGTGGTTCAAGTATTGACTGTCCGGAAAATGGTGGAGCTGCAGGAACTTATTTTGATGCAACTCTTCTCAGTTTAAGAGTTAGCAATGACAATATTAGCACAGAAACAGAAACTCCTTTGCTGGATTTTTCTACTAGCCCGCTGTGGTCCAAAGTCTATATTGAGAGCAAGGCGAAGGCTTTGGTTCCTCTCCTTTGGACAAGAGTGCAGTTAAGAGGCCAAATGAGTATACTAAGCGGGAGTAGTGTCAACTTTGGGCTGAAGGAATACCCAATCTCAGAATTTGAGCTTGTTGCAGAAGAACTTCTCATGAGTGACTCCATAATGAAGGTTTATGGTGCATTACGTGTGATTGTAAAGATGTTACTGATGTGGAATTCTGAAATCCAAATTGATGGTGGGAATGCTGTTGTATCAACTTCTGTACTTGAAGTGAGAAATCTTGCTGTTTTGCGGGAACATTCGGCATTAAGTTCAAATACAAATTTAGCTTTATATGGTCAGGGACTGCTGAGGTTGACTGGTGATGGCGACTCAATTAAAAGTCAGCGGCTTTTGCTCTCACAGTTTTACAACATCACTGTTGGTCCTGGCTCATTACTTCAGGCACCTTTGGACGATGATGCTAGCAAATTCAAGGTGACCAAATCTCATTGTGAGAGCCAGAAATGCCCAATGGATTTGATAACTCCACCAGATGATTGTCATGTTAACAGCACCATTTCCTTTTCACTCAAAATATGCCGAGTCGAAGATATTCTTGTCAGTGGTATTGTCAAAGGGAGTATAATCCACTTTCACAGAGCAAGGACCATAGTTGTCAGTGGCAGTGGAATCCTGACTGCATCGGAGCTGGGTTGCAGAAAAGGTATTGGTTCAGCCAGATACTCGAATGGAGCTGGTGGTGGTGCTGGGCATGGAGGCAAGGGAGGTTCAGGGTTGTTTAATGGAACAGTAAGTGAAGGTGGGGGTAAATATGGCAATGCCCATCTTCCTTGTGAACTGGGTAGTGGATCTGAGGGCCCAAATGAGTCATATGGACATGTGGCTGGTGGTGGAATGATAGTGATAGGTGCAATGCAGTGGCCCCTATGGAGGTTGGATTTACATGGATCTTTGAGGGCCGATGGTCAAAGATATGGTAAAGTGGCAAAAAATACCAGTGGCACTTTGATTGGAGGTCTTGGTGGGGGCTCTGGTGGGACTGTTCTTGTTTTTCTGCAAAAGCTCATACTTGCGGAGGATTCCAACTTATCTGTTGTTGGTGGAAGAGGTGGTCCTCTGGGTGGTGGTGGTGGTGGTGGTGGACGAATTCATTTTCATTGGTCTGATATAAATACTGGAGATGAATATGTTCTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_16972.p1 GENE.S_Transcript_16972~~S_Transcript_16972.p1 ORF type:3prime_partial len:777 (+),score=194.31 S_Transcript_16972:515-2842(+)
MRMPPALPHWYLHCCLFLVQLLLLVFSGVCGEYTSGENGTEVRFGDKAGQLPSDISSESRIFRYEDISVYISSSVNWVSCEDLAGVGSFNTTCLINSNLRLNSSIYALGIGNLEIRPHVSIVCPVEGCSISFDVSGNVKVGPHASIIAGSVVIASHSLSVGHNASINTTSLGGSPPSQTSGTPVGYDGAGGGHGGRGASCLIKEKPNTWGGDVYSWSTLSEPESYGSRGSGKSALNPFGGNGGGRIKLVAKEELYLNGSVTAEGGDGGTDGGGGSGGSIIIDAYKLKGFGAISAAGGRGWAGGGGGRISLKCYSIQDVKVTVHGGSSIDCPENGGAAGTYFDATLLSLRVSNDNISTETETPLLDFSTSPLWSKVYIESKAKALVPLLWTRVQLRGQMSILSGSSVNFGLKEYPISEFELVAEELLMSDSIMKVYGALRVIVKMLLMWNSEIQIDGGNAVVSTSVLEVRNLAVLREHSALSSNTNLALYGQGLLRLTGDGDSIKSQRLLLSQFYNITVGPGSLLQAPLDDDASKFKVTKSHCESQKCPMDLITPPDDCHVNSTISFSLKICRVEDILVSGIVKGSIIHFHRARTIVVSGSGILTASELGCRKGIGSARYSNGAGGGAGHGGKGGSGLFNGTVSEGGGKYGNAHLPCELGSGSEGPNESYGHVAGGGMIVIGAMQWPLWRLDLHGSLRADGQRYGKVAKNTSGTLIGGLGGGSGGTVLVFLQKLILAEDSNLSVVGGRGGPLGGGGGGGGRIHFHWSDINTGDEYVL

Click here to download the sequence:
Link to NCBI Protein BLAST