Transcript Information: S_Transcript_169962.p1


Annotated TAIR IDAT3G55530.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)SDIR1
Annotation TypeOrtholog
Chromosome Positionchr3:20595300-20597188 | Reverse length=273
E-Value1.5E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.996214981729
Replicate 213.657917345128
Replicate 314.490721208543
Condition 2: 8 Hour
Replicate 114.724674266592
Replicate 217.932989782638
Replicate 314.210565069988
Condition 3: 24 Hour
Replicate 110.575697562907
Replicate 214.209850115329
Replicate 318.015746003654


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_169962.p1 GENE.S_Transcript_169962~~S_Transcript_169962.p1 ORF type:complete len:126 (-),score=20.49,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|8.2e-14,zf-RING_11|PF17123.1|1.6e+04,zf-RING_11|PF17123.1|6.3e-11,zf-RING_11|PF17123.1|2.6e+03,zf-C3HC4|PF00097.21|4.4e+03,zf-C3HC4|PF00097.21|2.6e-09,zf-rbx1|PF12678.3|7.4e-07,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2.1e-07,zf-C3HC4_3|PF13920.2|1.6e+04,zf-C3HC4_3|PF13920.2|2.2e-06,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|3.7e-06 S_Transcript_169962:68-445(-)
ATGTGTGTGTGTGTGTGTTTTTTTTTTTGTTCTCAGTCCTACCTTTTCACTTTTTGTGCATACTGTATTTTGTGGGGTGGTTGTCTGGGGAACATGTTTTTCCTGTTGCTGATTCTTGTATTGACTCCATTGAGGGCAAAGCAAGATGCTAGGAGTGCAAAGGGCTTTGAGGACGATCTGACATGTACCATTTGTTTGGATCAAGTGAAGAGGGGAGATCTCCTCCGTACCTTGCCATGTTTGCATCAGTTCCATGCCAATTGCATTGATCCATGGCTGCGGCAGCAGGGGACATGCCCTGTGTGCAAACTGAGAGTAGGTTCAGAAATGCAAGATGGATTGGACAATGCAGCAGCAGAAATAGATGATATGGTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_169962.p1 GENE.S_Transcript_169962~~S_Transcript_169962.p1 ORF type:complete len:126 (-),score=20.49,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|8.2e-14,zf-RING_11|PF17123.1|1.6e+04,zf-RING_11|PF17123.1|6.3e-11,zf-RING_11|PF17123.1|2.6e+03,zf-C3HC4|PF00097.21|4.4e+03,zf-C3HC4|PF00097.21|2.6e-09,zf-rbx1|PF12678.3|7.4e-07,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2.1e-07,zf-C3HC4_3|PF13920.2|1.6e+04,zf-C3HC4_3|PF13920.2|2.2e-06,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|3.7e-06 S_Transcript_169962:68-445(-)
MCVCVCFFFCSQSYLFTFCAYCILWGGCLGNMFFLLLILVLTPLRAKQDARSAKGFEDDLTCTICLDQVKRGDLLRTLPCLHQFHANCIDPWLRQQGTCPVCKLRVGSEMQDGLDNAAAEIDDMV*

Click here to download the sequence:
Link to NCBI Protein BLAST