Transcript Information: S_Transcript_170078.p1


Annotated TAIR IDAT3G13770.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4519647-4521533 | Forward length=628
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46246921577723
Replicate 20.7667952136893
Replicate 31.2819595381966
Condition 2: 8 Hour
Replicate 12.1224322116578
Replicate 22.1912395192149
Replicate 32.7612946344526
Condition 3: 24 Hour
Replicate 10.31059076052978
Replicate 20.78768381465978
Replicate 30.83675028832139


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_170078.p1 GENE.S_Transcript_170078~~S_Transcript_170078.p1 ORF type:complete len:633 (+),score=121.48,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.0063,PPR|PF01535.16|5.1e-07,PPR|PF01535.16|0.023,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|0.00035,PPR|PF01535.16|4e-07,PPR|PF01535.16|0.063,PPR|PF01535.16|0.14,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|0.9,PPR_2|PF13041.2|7.5e+02,PPR_2|PF13041.2|0.15,PPR_2|PF13041.2|3.9e-09,PPR_2|PF13041.2|3.2,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|8.3,PPR_2|PF13041.2|1.6e+02,DYW_deaminase|PF14432.2|1.4e-40,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|5.2e+02,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|0.021,PPR_1|PF12854.3|5.5e+02,PPR_1|PF12854.3|0.064,PPR_1|PF12854.3|11,PPR_1|PF12854.3|52,PPR_1|PF12854.3|0.0071,PPR_3|PF13812.2|9.1,PPR_3|PF13812.2|3.4e+02,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|81,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|8.4e+03,PPR_3|PF13812.2|27,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|3,PPR_3|PF13812.2|2.2 S_Transcript_170078:128-2026(+)
ATGCTCAAGACAATAAAGTACTCAGCTGCCATTGCTAAGTCATTCTCCCGCCAACTTTCTCTGGTATCATTCCAGCCAAACCCATCAAATTTAGACACACTAAGCTCCAACGGTCACTTGAAAGAGGCCTTGCTGGAAATGGCCCTTCAAGGCCTGGAGATGAAGTTTGAAGGGTATGATATTATTTTAAATGAGTGTGTGAAGCGAAAGGCTCTTAGAGAAGGCCAAAGAGTGCATGCCCACATGATCAAAACCCAGTACCTTCCACCTGTGTACCTTAGAACTAGGCTTATTGGGTTCTACTGTAAATGTGAGTTTTTGGGGGATGCACGTGAGGTGTTCAATGAAATGCCTGAACGAAATATGGTCTCTTGGACTGCCATGATTTCTGGGTATTCCCAAAGAGGGTTTGCCTCTGAGTCTTTGGAGCTTTTTGTACAAATGTTGAGATCAGGTGCAGAACCAAGCGAGTTTACTTTTGCCTCCATTCTCTCTTCATGTATAGGACATCGTGGGTTTGAAAGTGGAAGACAAATTCACTCTCTTACAATAAGGTATAATTATGATTCCCACATGTTTGTTGGGAGCTCACTTCTTGACTTGTATGCCAAGGCTGGGAAAATCCATGAAGCTCGGATGATCTTTGATGGATTGCCAGAGAGAGATGTCGTTTCCTGCACTGCCATAATTTCAGGGTATGCACAGTTGGGTTTTGATGAAGAGGCAGTAGAATTATTCCATAGGCTACAGAAGGAAGGAATGTGTTCAAACTATGTTACTTATGCTAGTTTGTTAACGTTGCTATTTGGGCTCGCTGCTCTAGATCATGGTAAGCAAGTTCATAATCATGTTTTGCGACGTCAACTTCCCTCTTATGTGGTACTGCAAAACTCAATGATTGATATGTACGCAAAATGTGGGAACCTCATTTATGCAAGAAGGGTATTTGATAACATGCCCGAGAGAAGTGTCATATCATGGAATGCCATGCTTGTGGGATATAGCAAACATGGGATGGGATCTGAGGTTGTTGAACTTTTCAAATTGATGAGAGAAGAAGATAAAGTTAAACCTGACAGCATAACTTTCTTGGCCGTCTTATCTGGTTGCAGCCATGGTGGGTTGGAAGATACTGGACTGAACATTTTTGATGAGATGGTTATGCAGGGACATGGGGTTGAGCCGAACATAGAGCATTTTGGATGTGTTGTCGATTTGCTTGGGCGTTCTGGGCAGTTAGAGAACGCTTTAAAATTTATCAGGGAGATGCCTCTTGAGCCAACTGCCGCCATTTGGGGATCACTTTTAGGCGCTTGCAGGGTTCACTCCAACTTTGATGTAGGGGAGTTTGTGGGTCGCAAACTTCTAGAGATCGAGCCTGAAAATGCTGGAAATTATGTCATCCTATGCAATTTATATGCCTCAGCAGGGAGATGGGAAGAGGTAAGAACTCTGAGGGAATTGATGAAGGAGAAGACTGTGGTTAAGGAGCCAGGAAGGAGCTGGATTGAGCTGAATCAGATTCTGCATACGTTTCATGCAGGTGATCGGTCCCATCCCAGGAAAGATGAAGTGCATGCAAAAGTGAAGGAATTGGCAATTCGGATCAAAGAAGCTGGTTATGAACCTGATCTTAGTTGTGTCTTGTATGATGTTGATGAGGAACAGAAGGAGAAGATACTTCTAGGTCACAGTGAAAAACTGGCTTTGGCTTATGGGCTTTTGAGTACTCCTGATGGAGTCCCTCTCAGAGTTATTAAAAACCTCACAATTTGTGTGGATTGTCACAACTTTGCCAAGTTCATCTCAAAGATTTATAAAAGAGAGGTGTCTTTGAGGGATAAAAACCGCTTCCATCATATCACTGGAGGAGTTTGTTCTTGTGGAGATTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_170078.p1 GENE.S_Transcript_170078~~S_Transcript_170078.p1 ORF type:complete len:633 (+),score=121.48,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.0063,PPR|PF01535.16|5.1e-07,PPR|PF01535.16|0.023,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|0.00035,PPR|PF01535.16|4e-07,PPR|PF01535.16|0.063,PPR|PF01535.16|0.14,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|0.9,PPR_2|PF13041.2|7.5e+02,PPR_2|PF13041.2|0.15,PPR_2|PF13041.2|3.9e-09,PPR_2|PF13041.2|3.2,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|8.3,PPR_2|PF13041.2|1.6e+02,DYW_deaminase|PF14432.2|1.4e-40,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|5.2e+02,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|0.021,PPR_1|PF12854.3|5.5e+02,PPR_1|PF12854.3|0.064,PPR_1|PF12854.3|11,PPR_1|PF12854.3|52,PPR_1|PF12854.3|0.0071,PPR_3|PF13812.2|9.1,PPR_3|PF13812.2|3.4e+02,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|81,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|8.4e+03,PPR_3|PF13812.2|27,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|3,PPR_3|PF13812.2|2.2 S_Transcript_170078:128-2026(+)
MLKTIKYSAAIAKSFSRQLSLVSFQPNPSNLDTLSSNGHLKEALLEMALQGLEMKFEGYDIILNECVKRKALREGQRVHAHMIKTQYLPPVYLRTRLIGFYCKCEFLGDAREVFNEMPERNMVSWTAMISGYSQRGFASESLELFVQMLRSGAEPSEFTFASILSSCIGHRGFESGRQIHSLTIRYNYDSHMFVGSSLLDLYAKAGKIHEARMIFDGLPERDVVSCTAIISGYAQLGFDEEAVELFHRLQKEGMCSNYVTYASLLTLLFGLAALDHGKQVHNHVLRRQLPSYVVLQNSMIDMYAKCGNLIYARRVFDNMPERSVISWNAMLVGYSKHGMGSEVVELFKLMREEDKVKPDSITFLAVLSGCSHGGLEDTGLNIFDEMVMQGHGVEPNIEHFGCVVDLLGRSGQLENALKFIREMPLEPTAAIWGSLLGACRVHSNFDVGEFVGRKLLEIEPENAGNYVILCNLYASAGRWEEVRTLRELMKEKTVVKEPGRSWIELNQILHTFHAGDRSHPRKDEVHAKVKELAIRIKEAGYEPDLSCVLYDVDEEQKEKILLGHSEKLALAYGLLSTPDGVPLRVIKNLTICVDCHNFAKFISKIYKREVSLRDKNRFHHITGGVCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST