Transcript Information: S_Transcript_170420.p1


Annotated TAIR IDAT3G63520.1
Annotated Gene Namecarotenoid cleavage dioxygenase 1
Annotated Gene Symbol(s)CCD1, ATCCD1, ATNCED1, NCED1
Annotation TypeOrtholog
Chromosome Positionchr3:23452940-23455896 | Forward length=538
E-Value6.7E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.15241930647604
Condition 2: 8 Hour
Replicate 10.17624289518292
Replicate 20.18489131107212
Replicate 30.35232805958647
Condition 3: 24 Hour
Replicate 11.4442898175599
Replicate 21.1238253674222
Replicate 31.250679887857


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_170420.p1 GENE.S_Transcript_170420~~S_Transcript_170420.p1 ORF type:3prime_partial len:121 (+),score=9.28 S_Transcript_170420:276-635(+)
ATGTTAATAGAAATTTTAGGCAGATTAAAGTGTGTTTGTCTGGATATAGCACCACCTGCTCTTACTGTTATATATGCTGGCCTTTTGTTTTTCTTATCCCTTTTCCTCCCATTTTGGGCTGCTGCCCCGTCTTCAAAGAGTACTTTTATTTGTTTTTGTTATCTTCTCTCTCCCTCTCCCTCTCCCTCTCCCTTTTTCTTCACAAAGGGCATAAGTTGTGCTCCTCTTTCACAAATTTACCATGGGTTCTACTTTATTCAGGAAATGGTCAAGGAAAAGAAAATAATTTTCAGTTTTGACTCGACCAAAAAGTCCCGATTTGGTGTACTACCTCGATATGCGAAGAATGAGAGTCTAATC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_170420.p1 GENE.S_Transcript_170420~~S_Transcript_170420.p1 ORF type:3prime_partial len:121 (+),score=9.28 S_Transcript_170420:276-635(+)
MLIEILGRLKCVCLDIAPPALTVIYAGLLFFLSLFLPFWAAAPSSKSTFICFCYLLSPSPSPSPFFFTKGISCAPLSQIYHGFYFIQEMVKEKKIIFSFDSTKKSRFGVLPRYAKNESLI

Click here to download the sequence:
Link to NCBI Protein BLAST