Transcript Information: S_Transcript_170469.p2


Annotated TAIR IDAT2G30105.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:12849855-12851908 | Forward length=367
E-Value2.7E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6427778540235
Replicate 22.7238011799401
Replicate 32.2768809979754
Condition 2: 8 Hour
Replicate 12.8960406603514
Replicate 23.8667392710639
Replicate 32.1052688992574
Condition 3: 24 Hour
Replicate 14.8544185534654
Replicate 21.1192005716715
Replicate 33.1138326426069


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_170469.p2 GENE.S_Transcript_170469~~S_Transcript_170469.p2 ORF type:5prime_partial len:81 (-),score=14.47,ubiquitin|PF00240.19|1.7e-08 S_Transcript_170469:443-685(-)
AGAATGGAAGAGGAAAAGGTGAAGGTACAGATCAAATTCGGAGGGGAGACAATATCTGTGAGTGTCTCCCCGGATTCAACCATCTCTGACCTCAAATCCCATCTCCAACCCCTCACCAATGTCCTTCCTCGTGGCCAAAAGCTTATTCACAAAGGGCCTTCACCAAGGGGAGGGTCCCAAGCTCATGGATGCTCCTGTTGTTTCCAATTATCGGAGAATTATGAATGTGGACAGCAAGCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_170469.p2 GENE.S_Transcript_170469~~S_Transcript_170469.p2 ORF type:5prime_partial len:81 (-),score=14.47,ubiquitin|PF00240.19|1.7e-08 S_Transcript_170469:443-685(-)
RMEEEKVKVQIKFGGETISVSVSPDSTISDLKSHLQPLTNVLPRGQKLIHKGPSPRGGSQAHGCSCCFQLSENYECGQQA*

Click here to download the sequence:
Link to NCBI Protein BLAST