Transcript Information: S_Transcript_170569.p1


Annotated TAIR IDAT5G08305.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2670134-2671738 | Reverse length=534
E-Value7.7E-212
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.64667105805111
Replicate 20.37114973087408
Replicate 30.27577923115664
Condition 2: 8 Hour
Replicate 11.5944217059539
Replicate 21.6308450410268
Replicate 32.0319779959889
Condition 3: 24 Hour
Replicate 10.16332623170538
Replicate 20.59307170480161
Replicate 30.56572809880634


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_170569.p1 GENE.S_Transcript_170569~~S_Transcript_170569.p1 ORF type:complete len:535 (+),score=83.44,PPR|PF01535.16|0.018,PPR|PF01535.16|0.051,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|6.4e-07,PPR|PF01535.16|90,PPR|PF01535.16|0.0098,PPR|PF01535.16|7.1e-06,PPR|PF01535.16|0.092,PPR|PF01535.16|0.017,PPR|PF01535.16|21,PPR|PF01535.16|3.9e+02,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|6.6e-06,PPR_2|PF13041.2|4.4e-08,PPR_2|PF13041.2|1,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|1.7e+03,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|43,PPR_1|PF12854.3|0.7,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|0.3,PPR_1|PF12854.3|0.0087,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|0.0004,PPR_1|PF12854.3|1.4e+03,PPR_3|PF13812.2|6.9,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|4.3e-05,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|3.4e+02 S_Transcript_170569:75-1679(+)
ATGTATGCCACATTGATGAACAATGGCTTCTTACAACAAGCTTTAATCACTCTTCTCGAGAAACCCAGATCAATTCCACAGCTCAAACAAATCCATGCTTTGCTAATTTCTTCTGGGCTCTCACACTTTCACCCTTTTCCCTCCAAATTTTTCTCTCTCCTCACAAATTCATCCAATCTCGATTATGCTCATCGATTGTTGCTTCACAATGCTAGCCCATCAGTTCTCTACTGGAACACTGTTATCAGGGCTTATGCCAGTAGCCGTACCCCCAACATATCTATCAGGGTTTTTGTTGAAATGCTGCGTTTTGGGATATGCCCAGATCACTTTACTTACCCTTTTCTTGTCAAGGCGTCGGCCCGCCTTTCATCTCTCAATCATGGGATGTCGGTTCATTGCAGTGTGATAAAAAGTGGGCATGAGTTGGATTTGTTCATCCGGAATTCTTTGATTCATATGTATAGTTCTTGTTCGGAGATAATGTATGCCCGTAAGGTGTTCGATGAAATGCCCCAGCGGAGTACAGTTTCGTGGAACTCGATGCTAGATGGGTACGCAAAGTGCGGTAATATGAAGCGGGCGAGGGAAGTTTTTGAGTCTATGCCTGATAAGGATGTTGTGTCGTGGAGCTCGCTCATTGATGGGTATGTTAAGGGTGGTGAGTATAGGGAAGCTCTTGTAGTTTTCGATGGGATGAAGGCTGTGGGATCGCCTAAGGCTAATGAGGTGACTATGGTGAGTGTTTTGTGTGCGTGTGCGCATTTAGGTGCGCTCGAGCGAGGGAGGTTGATGCATCAGTATATGGTTGAAAATGAGCTTCCACTAACTATAGTGTTGCTAACTTCGCTTGTGGATATGTATGCCAAATGTGGAGCGATTGAGGAGGCTATGGCTGTGTTTAGATCAATACGAATGGATAGAACTGATGTTTTGCTATGGAATGCAATCATTGGAGGACTTGCAAACCACGGCTATGTGAAGGAGTCGCTAGATCTGTTCAAAGAAATGCAGGTTGTTGGAATTCCACCTGATGAGATCACTTACTTGTGTCTATTGTCTGCCTGTACTCATGGAGGATTGGTAAAGGAAGCTTGGCTATTTCTTGAAGCGCTTGAGAGAAATGGTATGAAACCCAAGTCTGAGCATTACGCGTGTATGGTGGATGTTCTAGCAAGGGCTGGCAGGGTGAAGGAGGCATATGACTTTGTGAACAGAATGCCTGTGGAGCCAACTCCAGCGATGCTGGGTGCCCTCCTTAGTGGATGTATGAACCATGGACAGTTGGACCTTGCTGAAACAGTGGGGAAGTGGCTGATCGAAGTTGACCCAAATCATGATGGCAGATATGTGGGACTCTCCAATGTTTATGCAGCAGTCAATCGTTGGGATGATGCGAAAACAATGAGGCAAGCTATGGAAACAACAGGGGTGAAGAAGTCCCCTGGGTTCAGCTATGTAGAAATTTCTGGATCCTTCGAGTTGTTCATTGCTCATGACAAAACACATCCAAAGTCGATAGAAATTTACATGATGGTGAATCTTATCTTGAAGCAAATGAAAAGGGTTTTGCCTTCTGATGACGAAGGGGACTTTTTGTACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_170569.p1 GENE.S_Transcript_170569~~S_Transcript_170569.p1 ORF type:complete len:535 (+),score=83.44,PPR|PF01535.16|0.018,PPR|PF01535.16|0.051,PPR|PF01535.16|1.3e-08,PPR|PF01535.16|6.4e-07,PPR|PF01535.16|90,PPR|PF01535.16|0.0098,PPR|PF01535.16|7.1e-06,PPR|PF01535.16|0.092,PPR|PF01535.16|0.017,PPR|PF01535.16|21,PPR|PF01535.16|3.9e+02,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|6.6e-06,PPR_2|PF13041.2|4.4e-08,PPR_2|PF13041.2|1,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|1.7e+03,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|43,PPR_1|PF12854.3|0.7,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|0.3,PPR_1|PF12854.3|0.0087,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|0.0004,PPR_1|PF12854.3|1.4e+03,PPR_3|PF13812.2|6.9,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|4.3e-05,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|3.4e+02 S_Transcript_170569:75-1679(+)
MYATLMNNGFLQQALITLLEKPRSIPQLKQIHALLISSGLSHFHPFPSKFFSLLTNSSNLDYAHRLLLHNASPSVLYWNTVIRAYASSRTPNISIRVFVEMLRFGICPDHFTYPFLVKASARLSSLNHGMSVHCSVIKSGHELDLFIRNSLIHMYSSCSEIMYARKVFDEMPQRSTVSWNSMLDGYAKCGNMKRAREVFESMPDKDVVSWSSLIDGYVKGGEYREALVVFDGMKAVGSPKANEVTMVSVLCACAHLGALERGRLMHQYMVENELPLTIVLLTSLVDMYAKCGAIEEAMAVFRSIRMDRTDVLLWNAIIGGLANHGYVKESLDLFKEMQVVGIPPDEITYLCLLSACTHGGLVKEAWLFLEALERNGMKPKSEHYACMVDVLARAGRVKEAYDFVNRMPVEPTPAMLGALLSGCMNHGQLDLAETVGKWLIEVDPNHDGRYVGLSNVYAAVNRWDDAKTMRQAMETTGVKKSPGFSYVEISGSFELFIAHDKTHPKSIEIYMMVNLILKQMKRVLPSDDEGDFLY*

Click here to download the sequence:
Link to NCBI Protein BLAST