Transcript Information: S_Transcript_170693.p1


Annotated TAIR IDAT5G54790.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22254195-22255489 | Reverse length=165
E-Value3E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.932787799203
Replicate 21.1093022682549
Replicate 31.9576088580358
Condition 2: 8 Hour
Replicate 12.0253163988339
Replicate 21.1248415517181
Replicate 31.0717465276248
Condition 3: 24 Hour
Replicate 11.9526152840755
Replicate 22.025815559897
Replicate 31.5499580360686


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_170693.p1 GENE.S_Transcript_170693~~S_Transcript_170693.p1 ORF type:5prime_partial len:179 (+),score=29.77 S_Transcript_170693:2-538(+)
AGAGGCAGAGCTGAATCATTTAATGTCAGGGGGTCATTGGTGCAAGATATTCAGGCCGGAAGACAAAGGCAGGAAAGGACCGGAGACGATAATTCGTCTCAACAGAGTAGTTGGACTCTGTACTTTGCAGACTTGATGATGAAGAATTGTAATGATCAGGAAGACAGTTTCTTTTGTTCTGACAGTAGTGCTTGTTCAGCTACAAGGAAAGACGATAACAGAAGCTGCTATTCGTTGCACAGGTGCCGTGACAAGTTGATCTCTAAACGGAGAAAACTCAAGGCAAAAACCTTCGTTGATCAGGACTTGGAGGACACTGCTACTTCACCTGTTCATAGTCCCAAGGTTAATGATTTTAGCTGCATGTATATGAAGTCGAAAGAGGTTGATGATCGAAGAGATGTTTGCCAGGAAAAAGAGCATGTTTCACAGAAGGTACAAGGCAGCATTGACATGGGGTTTTCAGATACAGAACTAAGAAGAAAGGGTTATTGTTTGGTTCCAATGTCAATGTTATTAAATTATTATGTCAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_170693.p1 GENE.S_Transcript_170693~~S_Transcript_170693.p1 ORF type:5prime_partial len:179 (+),score=29.77 S_Transcript_170693:2-538(+)
RGRAESFNVRGSLVQDIQAGRQRQERTGDDNSSQQSSWTLYFADLMMKNCNDQEDSFFCSDSSACSATRKDDNRSCYSLHRCRDKLISKRRKLKAKTFVDQDLEDTATSPVHSPKVNDFSCMYMKSKEVDDRRDVCQEKEHVSQKVQGSIDMGFSDTELRRKGYCLVPMSMLLNYYVN*

Click here to download the sequence:
Link to NCBI Protein BLAST