Transcript Information: S_Transcript_171365.p1


Annotated TAIR IDAT5G16860.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5543834-5546386 | Forward length=850
E-Value1.8E-307
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.57196083564863
Replicate 20.9483373513976
Replicate 30.58289304941848
Condition 2: 8 Hour
Replicate 11.7524024912941
Replicate 22.2060735700363
Replicate 32.1288899630765
Condition 3: 24 Hour
Replicate 10.66280303890551
Replicate 20.65899831385081
Replicate 30.35074903723929


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_171365.p1 GENE.S_Transcript_171365~~S_Transcript_171365.p1 ORF type:complete len:791 (+),score=136.24,PPR_2|PF13041.2|3.2e-06,PPR_2|PF13041.2|0.051,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|4.8e-10,PPR_2|PF13041.2|3.3e+03,PPR_2|PF13041.2|7.7e-08,PPR_2|PF13041.2|0.0014,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|0.68,PPR_2|PF13041.2|1.4e+03,PPR|PF01535.16|9.8,PPR|PF01535.16|0.00066,PPR|PF01535.16|0.00015,PPR|PF01535.16|0.00023,PPR|PF01535.16|8.7e-11,PPR|PF01535.16|1.8e-05,PPR|PF01535.16|3.4e+03,PPR|PF01535.16|6e+02,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|2e+03,PPR|PF01535.16|0.00041,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|0.92,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|3.6e+02,PPR_3|PF13812.2|42,PPR_3|PF13812.2|0.082,PPR_3|PF13812.2|29,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|2.6e-05,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|0.74,PPR_3|PF13812.2|0.0034,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|8.3e+02,PPR_3|PF13812.2|1.5e+03,PPR_1|PF12854.3|5.7e+02,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|0.062,PPR_1|PF12854.3|0.0098,PPR_1|PF12854.3|1.5e-08,PPR_1|PF12854.3|0.027,PPR_1|PF12854.3|34,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.61,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|9.8e+02,PPR_1|PF12854.3|8e+02,DYW_deaminase|PF14432.2|1.8e-06,DYW_deaminase|PF14432.2|1.1e-06 S_Transcript_171365:22-2394(+)
ATGCTGCAACGATCTTTGCCAAGAGTCCCGCCCAAACCCCTCTCACTCGCACTTCATTTCAAAACCCCTTTCTCCTCCACCCCATCCTCACCATCACCAACTCCCATCCCTCTGTTACCCTCCCTTTTCCAACAATGCAAATCCTTAACTTCTGCAAAGCTCATCCATCAGCAGGTCCTAGTCCAAGGCCTCACTTCCCACCACTTCAACGACATCGTTTCCATCTACTTCTCTTGCAACGCAACATCCCACGTCATCACCCTCCTCGAACGTCTCCCCCCCTATCAAGCTTCCCTTCCATGGTGGAATGCCCTGATTCAGAAATCTGTTCGTCTCTCTCACCTCCATCAAACCCTCCACCTATTTCGCAAAATGAAGAGTCTTGACTGCTCCCCTGATTCTTACACCTTCCCCTTTGTCATCAAGGCCTGTGGTGAAATTCCCTCTCTACCCCTTGGAAAGTCACTTCATTGTCAAGCTTATGTCACCGGGTTGGGCGCCAATTTGTTTGTTGGTAATTCCCTTGTGGCTATGTACGGCAGGTGTGGCTCATTGCACCTTGCACGCCAGATGTTCGACGAAATGTCTGAGAGAGGTGTTTTTGATCTTGTGTCGTGGAATTCTATCGTGGCTGCTTATGCTCAGAATGATTGTTTTCGTATTGCATTTAAATTGTTTGAGAGAATGAGTAATGAGTTTAGCATCCGTCCTAATGCTGTTAGTCTTGTTAATGTGCTTCCAGGCTGTGCTGCTCTGGGCTCTGTTTTGTTAGGGAAACAGGTGCATGGTTTTTCTGTGAGGAATGAGTTGTTCGACGACGTCTTTGTTGGGAATGCTCTGGTGGATATGTATGCCAAGTGTGGGATGATAGACAAAGCGAGTAAGGTATTCAAGGGGATGAGGGTCAGGGATGTCGTTTCATGGAATGCTATGGTTTCTGGCTATGCTCAAGCTGGTAAATTTGATGAGGCTTTGAGCTTATTAGAAGAAATGAAGGAGGATAATGTGGAGTGCAATATTGTTACTTGGAGTGCAGTCATTGCTGCATATGCACAGAGAGGAAGTGGTTATGAAGCTCTTGATGTGTTTCGCCAAATGACATGTTCAGGGTTGAAGCCAAATGCTGTGACCCTTATTTCTTTGCTTTCGGGTTGCGCTTCGGTGGGGGCATTGCCCCAAGGAATGGAGGCTCATTGTTATGCAATGAAATGTATTCTCAAGCTGGACAATGCTGAGCCTGGGGATGACCTAGCTATTTTGAATGGCCTCATTGACTTGTACAAAAAGTGCACAGAATTTAGGATTGCTCGCAGAATCTTTGACTCAGTTAGGATAGAAGATAGAAATGTGGTAACTTGGACTGCTATGATTGGTGGGTATGCTCAGCATGGTGATGCTAATGAAGCTATAGGACTGTTCCCCGAGATTACGCAGCAAACCCATACACCTCCCAATGCATTTACTATGTCGTGTGTTCTGATGGCTTGCGCCCACTTGGGGGCTTTAAGGTTTGGTGAACAGGTTCATGGTTACATATTACGCAATCAGTTTGAGCCTTCCGCTTTGTTTGTGGATAATTGTTTGATAGATATGTATGTAAAATGTGGCGAAGTGGATGCTGCTAGGACAGTGTTTTGTAATATGAAGGAGAGAAATGCTGTCTCATGGACATCATTAATGGCTGGCTATGGCATGCATGGCCGAGGTGGAGATGCTCTTCAGATATTTGAGCAGATGAGACAAGCGGGGCTAGACCCAGATGGTATTACTTTTGTTGTTGCCCTTTATGCTTGTAGCCATTCAGGCATGGTCGAACAGGGACTGAGATACTTTAACGACATGACAAGGGAATTCGGGGTTGTACCACAAGCAGAACACTATGCTTGTATGGTTGACCTTTTGGGTCGAGCAGAAGCAGCCAGGAAACTCATTGAGGACATGCCTATGGAGCCTCCTCCAATTGTCTGGATAGCATTGCTCGGTGCTTGTAGGATTCATGCAAATGTGGAACTTGGTGAATATGCTGCAAGTAGACTGTCAGGATTGGAGTCGCAAGATGATGGGGCATATACCCTTTTGTCAAACATCTATGCTGGCGCAAGACGTTGGAAAGATGTATCCAGTGTCAGATATTTTATGAGACATTCAGGGGTGAAGAAAAAGCCTGGCTGTAGCTGGGTTCAAGGGAAGAAAGGCATTGTAACATTTTATGTGGGAGATCGGTCACATCCACAGTCACAACAGATATATGAGCTTCTATTGTCACATCCACAGTCACAACAGATATATGAGCTTCTATCTAACTTAATCAAACGCATTAAAGCCATAGGATATGTGCCTGAGACTAGCTTTGCGCTCCATGATGTAGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_171365.p1 GENE.S_Transcript_171365~~S_Transcript_171365.p1 ORF type:complete len:791 (+),score=136.24,PPR_2|PF13041.2|3.2e-06,PPR_2|PF13041.2|0.051,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|4.8e-10,PPR_2|PF13041.2|3.3e+03,PPR_2|PF13041.2|7.7e-08,PPR_2|PF13041.2|0.0014,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|0.68,PPR_2|PF13041.2|1.4e+03,PPR|PF01535.16|9.8,PPR|PF01535.16|0.00066,PPR|PF01535.16|0.00015,PPR|PF01535.16|0.00023,PPR|PF01535.16|8.7e-11,PPR|PF01535.16|1.8e-05,PPR|PF01535.16|3.4e+03,PPR|PF01535.16|6e+02,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|2e+03,PPR|PF01535.16|0.00041,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|0.92,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|3.6e+02,PPR_3|PF13812.2|42,PPR_3|PF13812.2|0.082,PPR_3|PF13812.2|29,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|2.6e-05,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|0.74,PPR_3|PF13812.2|0.0034,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|8.3e+02,PPR_3|PF13812.2|1.5e+03,PPR_1|PF12854.3|5.7e+02,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|0.062,PPR_1|PF12854.3|0.0098,PPR_1|PF12854.3|1.5e-08,PPR_1|PF12854.3|0.027,PPR_1|PF12854.3|34,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.61,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|9.8e+02,PPR_1|PF12854.3|8e+02,DYW_deaminase|PF14432.2|1.8e-06,DYW_deaminase|PF14432.2|1.1e-06 S_Transcript_171365:22-2394(+)
MLQRSLPRVPPKPLSLALHFKTPFSSTPSSPSPTPIPLLPSLFQQCKSLTSAKLIHQQVLVQGLTSHHFNDIVSIYFSCNATSHVITLLERLPPYQASLPWWNALIQKSVRLSHLHQTLHLFRKMKSLDCSPDSYTFPFVIKACGEIPSLPLGKSLHCQAYVTGLGANLFVGNSLVAMYGRCGSLHLARQMFDEMSERGVFDLVSWNSIVAAYAQNDCFRIAFKLFERMSNEFSIRPNAVSLVNVLPGCAALGSVLLGKQVHGFSVRNELFDDVFVGNALVDMYAKCGMIDKASKVFKGMRVRDVVSWNAMVSGYAQAGKFDEALSLLEEMKEDNVECNIVTWSAVIAAYAQRGSGYEALDVFRQMTCSGLKPNAVTLISLLSGCASVGALPQGMEAHCYAMKCILKLDNAEPGDDLAILNGLIDLYKKCTEFRIARRIFDSVRIEDRNVVTWTAMIGGYAQHGDANEAIGLFPEITQQTHTPPNAFTMSCVLMACAHLGALRFGEQVHGYILRNQFEPSALFVDNCLIDMYVKCGEVDAARTVFCNMKERNAVSWTSLMAGYGMHGRGGDALQIFEQMRQAGLDPDGITFVVALYACSHSGMVEQGLRYFNDMTREFGVVPQAEHYACMVDLLGRAEAARKLIEDMPMEPPPIVWIALLGACRIHANVELGEYAASRLSGLESQDDGAYTLLSNIYAGARRWKDVSSVRYFMRHSGVKKKPGCSWVQGKKGIVTFYVGDRSHPQSQQIYELLLSHPQSQQIYELLSNLIKRIKAIGYVPETSFALHDVD*

Click here to download the sequence:
Link to NCBI Protein BLAST