Transcript Information: S_Transcript_172272.p1


Annotated TAIR IDAT5G48470.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19641810-19644127 | Forward length=397
E-Value5.7E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3502021249814
Replicate 24.8792707675273
Replicate 35.6746880257232
Condition 2: 8 Hour
Replicate 15.1262957493108
Replicate 24.7325064430191
Replicate 34.9190417549957
Condition 3: 24 Hour
Replicate 14.6210330460872
Replicate 22.8329764470434
Replicate 34.365353839347


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_172272.p1 GENE.S_Transcript_172272~~S_Transcript_172272.p1 ORF type:5prime_partial len:104 (+),score=15.73 S_Transcript_172272:1-312(+)
CTCGAGACAGTATCAAAGGTATTGGGGGGTATCTATGCAGGAAATGTCTCAGGCATTACTGCTCAACATTTAGAATGGGTACCTTTGCTTTTTCTTTCACTTTGTCTATTTTTGAGTGAAGATGGTAAAATGGGTCTTGCTCATCTCATCCTGAAGAGGACATTGAAGTTTGGATTGCTTGTCAAACCTTGGTTGGATTGTTTTGTCTATGCAGATCATGCTCTTTTCAGACTTTTGTCCTCTCTTAGCATCCTTGTGATGTTCTTAAATTTGTTTGCTTGTTCCCTCTTTTTTATCTGTGTTTCTACATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_172272.p1 GENE.S_Transcript_172272~~S_Transcript_172272.p1 ORF type:5prime_partial len:104 (+),score=15.73 S_Transcript_172272:1-312(+)
LETVSKVLGGIYAGNVSGITAQHLEWVPLLFLSLCLFLSEDGKMGLAHLILKRTLKFGLLVKPWLDCFVYADHALFRLLSSLSILVMFLNLFACSLFFICVST*

Click here to download the sequence:
Link to NCBI Protein BLAST