Transcript Information: S_Transcript_172488.p1


Annotated TAIR IDAT5G13500.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4338676-4340827 | Forward length=358
E-Value8.9E-79
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4193637486528
Replicate 21.0028540707961
Replicate 31.2574592784273
Condition 2: 8 Hour
Replicate 13.9985106844624
Replicate 21.3982405399829
Replicate 32.7855937211055
Condition 3: 24 Hour
Replicate 10.24823731239312
Replicate 21.9315748502569
Replicate 31.5763777753198


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_172488.p1 GENE.S_Transcript_172488~~S_Transcript_172488.p1 ORF type:internal len:176 (-),score=45.81 S_Transcript_172488:1-525(-)
GATGACTTGATGGATGAGATTCCTACTTATGTTGTTGACCCACTTCCAGCAGGTCTGGATCGGGTGAGTTTTTCTGCCAGACAGTTTCATTCTAGTTACTATATCGTTTTTGTTTCTTTTGTGATGATATTTTGTTATTGGTACAAGAAGCAGAAGAAGTTGCCTGGATCTGATTTTGGAGGGTTTACTAGGATTCTGCATTCTGGGAGATCTGATGACTTGATGGATGAGATTCCTACTTATGTTGTTGACCCACTTCCAGCAGGTCTGGATCGGGGTTACATTGTATTGAATAGGCCATGGGCTTTTGTGCAGTGGCTAGTAAAGGCTCCAATAGAGGAGGAGTATGTTTTGATGGCTGAACCTGATCATATATTTCTGAGGCCTTTACCAAATTTAGCTCTTGGAGGACTTCCTGCTGCTTTTCCCTTTTTCTACATTAAGCCTGCTGAACATGAAAAGATTGTAAGGAAGTTTTATCCTGAGGAAAATGGCCCTGTCACAAAAATTGATCCTATTGGAAAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_172488.p1 GENE.S_Transcript_172488~~S_Transcript_172488.p1 ORF type:internal len:176 (-),score=45.81 S_Transcript_172488:1-525(-)
DDLMDEIPTYVVDPLPAGLDRVSFSARQFHSSYYIVFVSFVMIFCYWYKKQKKLPGSDFGGFTRILHSGRSDDLMDEIPTYVVDPLPAGLDRGYIVLNRPWAFVQWLVKAPIEEEYVLMAEPDHIFLRPLPNLALGGLPAAFPFFYIKPAEHEKIVRKFYPEENGPVTKIDPIGN

Click here to download the sequence:
Link to NCBI Protein BLAST