Transcript Information: S_Transcript_172730.p1


Annotated TAIR IDATMG01250.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)
Annotated Gene Symbol(s)ORF102
Annotation TypeHomolog
Chromosome PositionchrM:310514-310882 | Forward length=122
E-Value8E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.73516577997736
Replicate 20.24378772991729
Replicate 30.71325498665858
Condition 2: 8 Hour
Replicate 11.0603785240563
Replicate 20.86520961590103
Replicate 30.94213691071741
Condition 3: 24 Hour
Replicate 11.3275896044008
Replicate 21.6277875717819
Replicate 31.1147864930438


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_172730.p1 GENE.S_Transcript_172730~~S_Transcript_172730.p1 ORF type:5prime_partial len:181 (+),score=12.46,RVT_1|PF00078.23|1.6e-12 S_Transcript_172730:2-544(+)
GGATGTTTCTCTATTGCGTTCTCTGTGTTGGTGAATGGGGCCCCGAGGGAGTGGTTCTCGTCCTCTCGGGGGTTACGGCAAGGGGATCTTTTGTCCCCTTTTCTGTTTACTTTGGTGGTGGACGTGTTTAGTAGTTTGTTGGATAGGGCGATGGATAGACTGGTGGAGGGTTTTGTAGTGGGTAGGGAGGTCGTGCAAGTCTCGCACTTGCTGTTTGCGGACGATACTATTATGTTTTTGAGGGGAGATTTGCCGAGATTCAAGCACGTGAACACTATTTTGCAGGATATTTCGGGGATGCATGTGAATATTGGTAAATGTAGTTTGGCTGGGGTTAATGTAAGTCTGGAGGTGTTGGATACTTTTGCTTCATTGGCTGGTTGTCAGATCCATAGTTGGCCGATGACGTATCTTGGTGTTCCCCTTGGGGGTAATCCACACTCGGTCTCTTTTTTGGATCCGGTGATGGAGCGAGTGGCTATGTGGTTCGAGGGGTGGAAGGGCGCTTGCTTCTCTTTTGGTGGTCATATCACTTTGTTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_172730.p1 GENE.S_Transcript_172730~~S_Transcript_172730.p1 ORF type:5prime_partial len:181 (+),score=12.46,RVT_1|PF00078.23|1.6e-12 S_Transcript_172730:2-544(+)
GCFSIAFSVLVNGAPREWFSSSRGLRQGDLLSPFLFTLVVDVFSSLLDRAMDRLVEGFVVGREVVQVSHLLFADDTIMFLRGDLPRFKHVNTILQDISGMHVNIGKCSLAGVNVSLEVLDTFASLAGCQIHSWPMTYLGVPLGGNPHSVSFLDPVMERVAMWFEGWKGACFSFGGHITLL*

Click here to download the sequence:
Link to NCBI Protein BLAST