Transcript Information: S_Transcript_172904.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value2E-52
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.10235769705839
Replicate 20.084856882913519
Replicate 30.21280080096462
Condition 2: 8 Hour
Replicate 10.082020731988973
Replicate 20.43022785845628
Replicate 30.49190417549957
Condition 3: 24 Hour
Replicate 10.084018782656131
Replicate 20.087168506062875
Replicate 30.6790550416762


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_172904.p1 GENE.S_Transcript_172904~~S_Transcript_172904.p1 ORF type:internal len:260 (+),score=53.42,SEO_C|PF14577.2|1.7e-44 S_Transcript_172904:3-779(+)
GTTTCTATTGAGGAACTGAAGACAAAGACTGTTCTATTGCTCATATCAGACCTCAACATCTCTGATCAAGAGTTGATAAACCTTCATCATATCTACCAAGAATCAGCAAATAAGTCTGATTATGAAATAGTGTGGCTTCCGATACTCGACAAATCCGATTCCTGGAGTGAAGCAAACAAACAAAGATATGAGCAGCTGCAGAATAAGATGCCTTGGTATACATTGCAACAACCTGAAAAACTTGAAGAAGCAGGCATCAGGTACATTAAAGAGGTATGCAAGTTTGAGCAGAAGACAATGGTAATTGTGATCGACCCACTTGGGAAAATGGTATGGAGAAATGGAATTGCAAGGATTTGGGCATGGGGAAAGGCCTTCCCACTTAATGCTGAGGAGGAGAAAGCACTTTGGAAGGACAAGATTTGGAATCTTGAGCTATTGGTGGATGCCATTGATCCTAACATACAACAATGGATGGGACAAGGGAAATACATTTGCTTGTATGGAGGTGAAGACATGGATTGGATTCGTAAATTTACAGCAAACGCCAAGAAAGTTGCTACATTTGCAACTATAGAGCTAGAGCTGGTTTATGTTGGGAAAAGCTTCAAAATCAGAGAGACCATAGAAAAGGAGATACTCAGCCATTCATGGCTTGACTCAACTTTGAGCTGGTATTTCTGGACTAGGCTCGAGTGCTTGTTATACTCAAGAATGCAATATTTATCAGAAAACAATAATGAAGATCAGAGTGACTATATAATGCAAGAAATTCAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_172904.p1 GENE.S_Transcript_172904~~S_Transcript_172904.p1 ORF type:internal len:260 (+),score=53.42,SEO_C|PF14577.2|1.7e-44 S_Transcript_172904:3-779(+)
VSIEELKTKTVLLLISDLNISDQELINLHHIYQESANKSDYEIVWLPILDKSDSWSEANKQRYEQLQNKMPWYTLQQPEKLEEAGIRYIKEVCKFEQKTMVIVIDPLGKMVWRNGIARIWAWGKAFPLNAEEEKALWKDKIWNLELLVDAIDPNIQQWMGQGKYICLYGGEDMDWIRKFTANAKKVATFATIELELVYVGKSFKIRETIEKEILSHSWLDSTLSWYFWTRLECLLYSRMQYLSENNNEDQSDYIMQEIQ

Click here to download the sequence:
Link to NCBI Protein BLAST