Transcript Information: S_Transcript_173175.p1


Annotated TAIR IDAT1G48050.1
Annotated Gene NameKu80 family protein
Annotated Gene Symbol(s)KU80, ATKU80
Annotation TypeOrtholog
Chromosome Positionchr1:17723498-17726859 | Forward length=680
E-Value4.7E-276
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9523051099167
Replicate 21.6752954747663
Replicate 32.207431732014
Condition 2: 8 Hour
Replicate 11.9212063348768
Replicate 22.0154818594348
Replicate 31.7008784446703
Condition 3: 24 Hour
Replicate 11.6306348036737
Replicate 21.1667341866845
Replicate 32.0450306274419


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_173175.p1 GENE.S_Transcript_173175~~S_Transcript_173175.p1 ORF type:complete len:777 (+),score=200.24,Ku|PF02735.12|1.3e-44,Ku_PK_bind|PF08785.7|8.2e+03,Ku_PK_bind|PF08785.7|1.8e-33,Ku_N|PF03731.11|3.2e-15,Ku_N|PF03731.11|1.2e+03,Ku_C|PF03730.10|9.7e-09,Ku_C|PF03730.10|4e+03 S_Transcript_173175:140-2332(+)
ATGGCTCGCAATAAGGAAGCACTCATTTTACTGCTTGATGTTAGTCCGAAAATGCATGGTGTCCTTCCACAGGTTGAGAAAGTCTGTGCCATGCTTCTTGAAAAGAAGCTTATTTATAACAAATATGATGAAGTGGGAATTGTGTTATTTGGAACAGAAGAAACGGACAATGCACTGGCAGTGGAAATTGGTGGCTACCAAAATATCATGGTTCTGAGGCATATAAAAGTTGTTGACGGAGATTTAGTTGATGTTATGGAGAAACTTCCTCGAGGAACGGTTCCTGGTGACTTTCTTGATGCCATTGTTGTTGGGATGGATATGCTAATAAAGAAGTATGGATCAGAAACCAAGGGAAATAAACGCCTTTGTCTAATTACAAATGCTCTTTCCCAACTAAAAGATCCATTTGAGGGAACAAAAGAAGATCAAGTTAGCACCATTGCTGCTGAAATGACTGACCAGGCAATGAATTTGGAATGCATAGTAGTGAGAGGGAAGCTAAGTAGTGATGCTGATAAGAATGTTATGGATGAGAATGACCATCTGTTGGACCTCTTCACGAAGAGAACCTGCGGAAAGACTGTTTATGTTGAAAGCGCGACTTCTCTGTTAGGAGCACTGAGGACACGGAGTATATCACCTGTTACAATATTCAGGGGTGATCTTGAAGTCAGTCCTACACTGAAGATCAAGGTTTGGGTGTACAAGAAAACTTCTGAAGAGAGATTTCCTGTTCTGAAGAAGTATTCAGACAAAGCACCTGCCACTGATAGATTTGCCACACATGAAATCAAGGTAGATTATGAATTTCAAAGTATCCAAGACCCAAACAAAGTTGTACCTCCAGAACAAAGAATCAAAGGTTATCAGTATGGACCTGAAGTGGTCCCTGTCTCATCTGATGCATGGGAAGCTTTCAAGTTCAAGACTGAGAAGGGTGTGAAGCTTCTTGGATTCACAGATGCTAAAAACATATTACGTCAATATTACATGAAAGATGTCAACGTGTTCATTGCTGAACCAGGCAAGACAGAAGCCGTTTTAGCAATTTCTGCTTTGGCTAGAGCAATGAAGGAAATGAATAAGGTAGCCATAGTGCGGTGTGTTTGGCGGCAAGGACAGACAGGTGTTGTGGTGGGGGTCTTGACACCAAATGTTTCTGATAACGACAACACTCCGGATTCATTATACTTCAATGTACTCCCATTTGCTGAGGATGTGCGGGAGTTCCAATTTCCTTCTTTCAAAAGTCTCCCTGAAGCATTTCAGCCCACTGAGGAACAGCAGCAGGCAGCAGATAACTTGGTAAAGATGCTTGACCTTGCACCACCTGCCAAGGAGGAAAATCTAAAGCCTGAGCTTACACCAAACCCTGTTCTGGAGAGGTTTTATCACTTTCTCGAGCTAAAAGTGAAAAGCCCAGATGCAGCTGTGCCTTCACTTGATGAAGCCTTGAAGAGGATAACTGAACCTGATCCAGAACTTCTTTCACAAAACAAGTCTGTGATTGATGAGTTTCGAAGATGCTTTGAACTAAAAGAGAATCCAAAGATGAAATCAGGCCGGTCATTCAGGGAGAAACCATCTGGATCTGACGATGAGAAAGAGCCTATGGAAGTTGAACATCATCTTGAGGAAAAACCTTTGAAGAGCACTGAAATTTCTAATGAGGTTGAGAAAGAGGCTGTACAACATCACTGTGAGGAAAAACCTTCAAAGAGCAGTAATTCTTTAATTGGTGCAAAAGGGGATGAGAACCCTTCCAGTAAAGCAAATAATTGTACTGACACTGTGGTTGAGAAGATCGGAGATCTGACTCCAGTTCAGGATTTTGAAGCTATGCTATCACGTAGAGATAACCCAGATTGGATTTCTAAAGCAATCAAGGGGATGAAGAACAAAATTTGCAATCTTGTGGAGGAGTCGTATGAAGGGAACACCTACGATGAAGCAGTGGAATATCTTTATGCTCTTCGGAAAGGCTGTGTCCTTGAACAGGAACCAAAACAGTTCAACGATTTCTTGCAATATCTCTGTAGATTCTGTCGGGAACATGACTTTAATGATTTTTGTGAACTTCTTGCCGCCAAAGGGATGACATTAATCACTAAATCAGAAGCCATTGACAGTAATGTGGCAGATGAAGAAAAGAGAAGTTTTCTGACTACAAAAGAGCCCAAAGTCGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_173175.p1 GENE.S_Transcript_173175~~S_Transcript_173175.p1 ORF type:complete len:777 (+),score=200.24,Ku|PF02735.12|1.3e-44,Ku_PK_bind|PF08785.7|8.2e+03,Ku_PK_bind|PF08785.7|1.8e-33,Ku_N|PF03731.11|3.2e-15,Ku_N|PF03731.11|1.2e+03,Ku_C|PF03730.10|9.7e-09,Ku_C|PF03730.10|4e+03 S_Transcript_173175:140-2332(+)
MARNKEALILLLDVSPKMHGVLPQVEKVCAMLLEKKLIYNKYDEVGIVLFGTEETDNALAVEIGGYQNIMVLRHIKVVDGDLVDVMEKLPRGTVPGDFLDAIVVGMDMLIKKYGSETKGNKRLCLITNALSQLKDPFEGTKEDQVSTIAAEMTDQAMNLECIVVRGKLSSDADKNVMDENDHLLDLFTKRTCGKTVYVESATSLLGALRTRSISPVTIFRGDLEVSPTLKIKVWVYKKTSEERFPVLKKYSDKAPATDRFATHEIKVDYEFQSIQDPNKVVPPEQRIKGYQYGPEVVPVSSDAWEAFKFKTEKGVKLLGFTDAKNILRQYYMKDVNVFIAEPGKTEAVLAISALARAMKEMNKVAIVRCVWRQGQTGVVVGVLTPNVSDNDNTPDSLYFNVLPFAEDVREFQFPSFKSLPEAFQPTEEQQQAADNLVKMLDLAPPAKEENLKPELTPNPVLERFYHFLELKVKSPDAAVPSLDEALKRITEPDPELLSQNKSVIDEFRRCFELKENPKMKSGRSFREKPSGSDDEKEPMEVEHHLEEKPLKSTEISNEVEKEAVQHHCEEKPSKSSNSLIGAKGDENPSSKANNCTDTVVEKIGDLTPVQDFEAMLSRRDNPDWISKAIKGMKNKICNLVEESYEGNTYDEAVEYLYALRKGCVLEQEPKQFNDFLQYLCRFCREHDFNDFCELLAAKGMTLITKSEAIDSNVADEEKRSFLTTKEPKVE*

Click here to download the sequence:
Link to NCBI Protein BLAST