Transcript Information: S_Transcript_173176.p1


Annotated TAIR IDAT1G48050.1
Annotated Gene NameKu80 family protein
Annotated Gene Symbol(s)KU80, ATKU80
Annotation TypeOrtholog
Chromosome Positionchr1:17723498-17726859 | Forward length=680
E-Value4E-206
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9417211201634
Replicate 21.5466047043179
Replicate 30.73876482166068
Condition 2: 8 Hour
Replicate 11.3423707781886
Replicate 21.3442312487389
Replicate 31.3417700924452
Condition 3: 24 Hour
Replicate 11.4375745930863
Replicate 21.6211596263482
Replicate 31.1546572545976


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_173176.p1 GENE.S_Transcript_173176~~S_Transcript_173176.p1 ORF type:complete len:699 (+),score=176.81,Ku|PF02735.12|1.1e-44,Ku_PK_bind|PF08785.7|6.9e+03,Ku_PK_bind|PF08785.7|1.5e-33,Ku_C|PF03730.10|3.8e-08,Ku_C|PF03730.10|4e+03 S_Transcript_173176:954-3050(+)
ATGGATTCCTTTATGATGGCAAAGAAGCTGATACTGCCAATCTTTTCAGTGGATTGGTTTTGCACATTGCCTTTTTATGCTGTACTTGCTACAAGCCATAGTTGTAGTTTCTGTAATTTCCATGTAACACTGACTGTCATTTGGCTTTTATTATGTCCTTTTGCTTTGAGAGTTGAGACCTTAACATCACTCTTAGTTCTTGATGCCATTGTTGTTGGGATGGATATGCTAATAAAGAAGTATGGATCAGAAACCAAGGGAAATAAACGCCTTTGTCTAATTACAAATGCTCTTTCCCAACTAAAAGATCCATTTGAGGGAACAAAAGAAGATCAAGTTAGCACCATTGCTGCTGAAATGACTGACCAGGCAATGAATTTGGAATGCATAGTAGTGAGAGGGAAGCTAAGTAGTGATGCTGATAAGAATGTTATGGATGAGAATGACCATCTGTTGGACCTCTTCACGAAGAGAACCTGCGGAAAGACTGTTTATGTTGAAAGCGCGACTTCTCTGTTAGGAGCACTGAGGACACGGAGTATATCACCTGTTACAATATTCAGGGGTGATCTTGAAGTCAGTCCTACACTGAAGATCAAGGTTTGGGTGTACAAGAAAACTTCTGAAGAGAGATTTCCTGTTCTGAAGAAGTATTCAGACAAAGCACCTGCCACTGATAGATTTGCCACACATGAAATCAAGGTAGATTATGAATTTCAAAGTATCCAAGACCCAAACAAAGTTGTACCTCCAGAACAAAGAATCAAAGGTTATCAGTATGGACCTGAAGTGGTCCCTGTCTCATCTGATGCATGGGAAGCTTTCAAGTTCAAGACTGAGAAGGGTGTGAAGCTTCTTGGATTCACAGATGCTAAAAACATATTACGTCAATATTACATGAAAGATGTCAACGTGTTCATTGCTGAACCAGGCAAGACAGAAGCCGTTTTAGCAATTTCTGCTTTGGCTAGAGCAATGAAGGAAATGAATAAGGTAGCCATAGTGCGGTGTGTTTGGCGGCAAGGACAGACAGGTGTTGTGGTGGGGGTCTTGACACCAAATGTTTCTGATAACGACAACACTCCGGATTCATTATACTTCAATGTACTCCCATTTGCTGAGGATGTGCGGGAGTTCCAATTTCCTTCTTTCAAAAGTCTCCCTGAAGCATTTCAGCCCACTGAGGAACAGCAGCAGGCAGCAGATAACTTGGTAAAGATGCTTGACCTTGCACCACCTGCCAAGGAGGAAAATCTAAAGCCTGAGCTTACACCAAACCCTGTTCTGGAGAGGTTTTATCACTTTCTCGAGCTAAAAGTGAAAAGCCCAGATGCAGCTGTGCCTTCACTTGATGAAGCCTTGAAGAGGATAACTGAACCTGATCCAGAACTTCTTTCACAAAACAAGTCTGTGATTGATGAGTTTCGAAGATGCTTTGAACTAAAAGAGAATCCCATGGTGAAATCAGGCCGGTCATTCAGGGAGAAACCATCTGGATCTGACGATGAGAAAGAGCCTATGGAAGTTGAACATCATCTTGAGGAAAAACCTTTGAAGAGCACTGAAATTTCTAATGAGGTTGAGAAAGAGGCTGTACAACATCACTGTGAGGAAAAACCTTCAAAGAGCAGTAATTCTTTAATTGGTGCAAAAGGGGATGAGAACCCTTCCAGTAAAGCAAATAATTGTACTGACACTGTGGTTGAGAAGATCGGAGATCTGACTCCAGTTCAGGATTTTGAAGCTATGCTATCACGTAGAGATAACCCAGATTGGATTTCTAAAGCAATCAAGGGGATGAAGAACAAAATTTGCAATCTTGTGGAGGAGTCGTATGAAGGGAACACCTACGATGAAGCAGTGGAATATCTTTATGCTCTTCGGAAAGGCTGTGTCCTTGAACAGGAACCAAAACAGTTCAACGATTTCTTGCAATATCTCTGTAGATTCTGTCGGGAACATGACTTTAATGATTTTTGTGAACTTCTTGCCGCCAAAGGGATGACATTAATCACTAAATCAGAAGCCATTGACAGTAATGTGGCAGATGAAGAAAAGAGAAGTTTTCTGACTACAAAAGAGCCCAAAGTCGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_173176.p1 GENE.S_Transcript_173176~~S_Transcript_173176.p1 ORF type:complete len:699 (+),score=176.81,Ku|PF02735.12|1.1e-44,Ku_PK_bind|PF08785.7|6.9e+03,Ku_PK_bind|PF08785.7|1.5e-33,Ku_C|PF03730.10|3.8e-08,Ku_C|PF03730.10|4e+03 S_Transcript_173176:954-3050(+)
MDSFMMAKKLILPIFSVDWFCTLPFYAVLATSHSCSFCNFHVTLTVIWLLLCPFALRVETLTSLLVLDAIVVGMDMLIKKYGSETKGNKRLCLITNALSQLKDPFEGTKEDQVSTIAAEMTDQAMNLECIVVRGKLSSDADKNVMDENDHLLDLFTKRTCGKTVYVESATSLLGALRTRSISPVTIFRGDLEVSPTLKIKVWVYKKTSEERFPVLKKYSDKAPATDRFATHEIKVDYEFQSIQDPNKVVPPEQRIKGYQYGPEVVPVSSDAWEAFKFKTEKGVKLLGFTDAKNILRQYYMKDVNVFIAEPGKTEAVLAISALARAMKEMNKVAIVRCVWRQGQTGVVVGVLTPNVSDNDNTPDSLYFNVLPFAEDVREFQFPSFKSLPEAFQPTEEQQQAADNLVKMLDLAPPAKEENLKPELTPNPVLERFYHFLELKVKSPDAAVPSLDEALKRITEPDPELLSQNKSVIDEFRRCFELKENPMVKSGRSFREKPSGSDDEKEPMEVEHHLEEKPLKSTEISNEVEKEAVQHHCEEKPSKSSNSLIGAKGDENPSSKANNCTDTVVEKIGDLTPVQDFEAMLSRRDNPDWISKAIKGMKNKICNLVEESYEGNTYDEAVEYLYALRKGCVLEQEPKQFNDFLQYLCRFCREHDFNDFCELLAAKGMTLITKSEAIDSNVADEEKRSFLTTKEPKVE*

Click here to download the sequence:
Link to NCBI Protein BLAST