Transcript Information: S_Transcript_173240.p1


Annotated TAIR IDAT5G18810.1
Annotated Gene NameSC35-like splicing factor 28
Annotated Gene Symbol(s)SCL28, At-SCL28
Annotation TypeOrtholog
Chromosome Positionchr5:6268925-6271158 | Reverse length=236
E-Value5.4E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.3326117396966
Replicate 26.6454185414201
Replicate 34.6106840209001
Condition 2: 8 Hour
Replicate 18.157604127337
Replicate 28.4231357830296
Replicate 36.2920273050849
Condition 3: 24 Hour
Replicate 16.1191992910399
Replicate 25.8707463721864
Replicate 36.9892412206948


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_173240.p1 GENE.S_Transcript_173240~~S_Transcript_173240.p1 ORF type:complete len:332 (+),score=49.08,RRM_1|PF00076.18|4.8e-18,RRM_6|PF14259.2|2.6e-14,RRM_5|PF13893.2|3e-06 S_Transcript_173240:253-1248(+)
ATGGGGAGATACCGAAGCCAAAGCAGGAGTTACAGCCCGAGGCGAGGAAGGAGCCGTACACCACCTCGTCCTTGTCGTAAGCGCTACGATGACCCTCATGATCATCATCGATACCGCTCTTCTTCTTACCGCGGCCGCCGTTCTCCCGCTCCTTCTGGTCTTCTCGTTCGTAATGTCGCCCTTGATACCAGGCCTGAAGATCTGAGGATCCCCTTTGAGAAGTTTGGTGCAGTGAAGGACGTTTATTTGCCTAGAAACTACTATACTGGGGAGCCACGAGGCTTTGGATTTGTGAAATTTCGGCATCCTGATGATGCAGCTGAAGCAAAGGAACGACTGGATCACACAATAATTGGTGGGCGGGAGATACGAATAGTATATGCTGAGGAGAATCGCAAAACTCCTCAAGAAATGCGCAGGACTTCACATACAAGTGGGCCTAGTGGCAGATATGGAGGGAGAAGGAGGACTCCACCAAGGTCGCCGAGGCGCCGATATCGTTCCTACTCAAGGTCACTGTCTTCTGTAAGGCATCGTTCAAGGTCTGTTTCTAGGTCCCTTTCCCCTCGCAGCGATAGAGATTACCAGTCAAACAAGAGGTCCCCCAGCCCACGGGAAAGCTCTCCTTGTGATGAAAGAGGATACAGGAAAAGGGAGAGGTCTCAAAGTCCAAGGAAGACTTCAGCAGGTGAGGAAAAGGAATACAAGTCTAGGAGGTCTTACAGTCCAAGAGAGTTGTCCCTTCATGATGGGAACTACAGGTCATCTAGGAGGTCTATTAGTCCAATTGAGGAATCTCCAAATGGCATGGGCAGCAAGGCCAAACAGAGGTTGCTACTTCAAGCGAAGTTTCTCCACATGATGATTACTATAAGTCAAAGAGGTCTCCTAGTCCTGAAAAGTTTTCTAAGCATGGAGTTAAGAGAGGTGCCTTGTGCCAATTCACACCTAGTCCGAGGCGGCTCTCCCCGATTGACAAGAAGGGCGACAGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_173240.p1 GENE.S_Transcript_173240~~S_Transcript_173240.p1 ORF type:complete len:332 (+),score=49.08,RRM_1|PF00076.18|4.8e-18,RRM_6|PF14259.2|2.6e-14,RRM_5|PF13893.2|3e-06 S_Transcript_173240:253-1248(+)
MGRYRSQSRSYSPRRGRSRTPPRPCRKRYDDPHDHHRYRSSSYRGRRSPAPSGLLVRNVALDTRPEDLRIPFEKFGAVKDVYLPRNYYTGEPRGFGFVKFRHPDDAAEAKERLDHTIIGGREIRIVYAEENRKTPQEMRRTSHTSGPSGRYGGRRRTPPRSPRRRYRSYSRSLSSVRHRSRSVSRSLSPRSDRDYQSNKRSPSPRESSPCDERGYRKRERSQSPRKTSAGEEKEYKSRRSYSPRELSLHDGNYRSSRRSISPIEESPNGMGSKAKQRLLLQAKFLHMMITISQRGLLVLKSFLSMELREVPCANSHLVRGGSPRLTRRATG*

Click here to download the sequence:
Link to NCBI Protein BLAST