Transcript Information: S_Transcript_17345.p1


Annotated TAIR IDAT5G25560.2
Annotated Gene NameCHY-type/CTCHY-type/RING-type Zinc finger protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8899486-8901453 | Forward length=328
E-Value9.9E-119
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.300146716094
Replicate 241.839279679018
Replicate 348.63913298732
Condition 2: 8 Hour
Replicate 184.749090016793
Replicate 299.803946522304
Replicate 393.546750888182
Condition 3: 24 Hour
Replicate 162.025886802309
Replicate 242.157038113517
Replicate 358.546507220166


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_17345.p1 GENE.S_Transcript_17345~~S_Transcript_17345.p1 ORF type:5prime_partial len:193 (+),score=21.54,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|9.8e+03,zinc_ribbon_6|PF14599.2|3.2e+03,zinc_ribbon_6|PF14599.2|3.6e-27,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|2.3e-09,zf-RING_2|PF13639.2|23,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|1.2e+03,zf-RING_5|PF14634.2|2.2e-08,zf-RING_5|PF14634.2|9.3,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|5.4e-08,zf-C3HC4|PF00097.21|75,zf-C3HC4_2|PF13923.2|3e+03,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|1.2e-07,zf-C3HC4_2|PF13923.2|1.5,zf-RING_UBOX|PF13445.2|6.9e+03,zf-RING_UBOX|PF13445.2|1.6e+04,zf-RING_UBOX|PF13445.2|2.1e-07,zf-RING_UBOX|PF13445.2|4.7e+03 S_Transcript_17345:1-579(+)
TGTGGGACTGAGCAAGAGGTTCGGCAAGTGTGTATCAACTGTGGCGTTTGCATGGGCAAGTATTTCTGTGAGATATGCAAATTGTTTGATGATGATACTTCCAAGAAGCAGTATCACTGTGAGGGTTGTGGGATCTGCAGGATTGGTGGCCGCGAAAATTTTTTTCACTGTTACAAATGCCGTTGTTGTTATTCTGTAGTATTGAAAAACAGCCATCCCTGTGTGGAAGGTGCTATGCATCATGACTGCCCTGTATGCTTTGAGTATTTATTCGAGTCAAGAAATGGTGTCACAGTTTTGCCATGTGGGCACACAATTCACAGTGACTGCTTGAAGGAAATGCAGGAGCACTATCAATATGCTTGTCCTCTTTGCGCAAAATCAGTTTGTGACATGTCCAAGGTGTGGGAGAAATTTGACATGGAAATTGCAGCAACACCAATGCCTGAGCCATACCAGAACAAGATGGTATCTATCCTTTGCAATGACTGTGGTTCAAAATCAAATGTCCAGTACCATATTATAGCGCAAAAGTGTCCGAACTGCAAGTCCTACAACACTCGCCAAATGAGAGGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_17345.p1 GENE.S_Transcript_17345~~S_Transcript_17345.p1 ORF type:5prime_partial len:193 (+),score=21.54,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|9.8e+03,zinc_ribbon_6|PF14599.2|3.2e+03,zinc_ribbon_6|PF14599.2|3.6e-27,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|2.3e-09,zf-RING_2|PF13639.2|23,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|1.2e+03,zf-RING_5|PF14634.2|2.2e-08,zf-RING_5|PF14634.2|9.3,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|5.4e-08,zf-C3HC4|PF00097.21|75,zf-C3HC4_2|PF13923.2|3e+03,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|1.2e-07,zf-C3HC4_2|PF13923.2|1.5,zf-RING_UBOX|PF13445.2|6.9e+03,zf-RING_UBOX|PF13445.2|1.6e+04,zf-RING_UBOX|PF13445.2|2.1e-07,zf-RING_UBOX|PF13445.2|4.7e+03 S_Transcript_17345:1-579(+)
CGTEQEVRQVCINCGVCMGKYFCEICKLFDDDTSKKQYHCEGCGICRIGGRENFFHCYKCRCCYSVVLKNSHPCVEGAMHHDCPVCFEYLFESRNGVTVLPCGHTIHSDCLKEMQEHYQYACPLCAKSVCDMSKVWEKFDMEIAATPMPEPYQNKMVSILCNDCGSKSNVQYHIIAQKCPNCKSYNTRQMRG*

Click here to download the sequence:
Link to NCBI Protein BLAST