Transcript Information: S_Transcript_174227.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value7E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6396635832102
Replicate 21.6730077389585
Replicate 31.7918298090702
Condition 2: 8 Hour
Replicate 11.0864831559677
Replicate 21.033770257049
Replicate 31.0354854879197
Condition 3: 24 Hour
Replicate 11.397658422384
Replicate 21.3426428658974
Replicate 31.6436166377741


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_174227.p1 GENE.S_Transcript_174227~~S_Transcript_174227.p1 ORF type:complete len:844 (+),score=73.21,rve|PF00665.22|7.5e-19,UBN2|PF14223.2|7e-15,gag_pre-integrs|PF13976.2|1e-09,UBN2_3|PF14244.2|2.5e-09,UBN2_2|PF14227.2|6.2e-06 S_Transcript_174227:1183-3714(+)
ATGTCTCACAAACCCGACTCCTCCCCTATCTCCAAGGGTTCTTCTTTTCACCCAGCCCTAACTGTCTCCAACATCAAGACACACATTCCTCTCACTCTTGCCATGGAAAATGTCCAGTATGCTAACTGGGCAGAACTGTTTAAAGTCCATTGTCGTTCTCATAAAGTTCTTCATCATATTCTCCCTCCCACTACAAAAACTAGCCCCACAACAGAACCTACTCTTTCCCCTGACGAACAAGACTTATGGGACACGTTAGATGCCATTGTGGTCCAATGGATATATTCCACCATATCTACGGACTTGTTAAACACCATTATTGAGGCTGATGCCTCGGCTCTGACATTATGGACTCGGCTCCGAGACTTATTTCAAGACAACGAGAATTCCCGTGCCATTGCTCTTGAACAAGAATTCAATTCCACTTACTTGAAGGATTTTCCCTCCGTCTCGGCATATTGTCAGCACCTTAAAACTGTTTCGGATCAACTCCGGAATGTTGGTGCGCCGGTCTCTAACAACCGGCTTGTTCTTCGTATGTTGGCAGGTCTTACTCCAGCCTTCAAGGGAGTTGCGTCTGTCATACGCCATCGCAAGGTTCTACCTCCTTTCTATGAGGCTCGATCCATGTTAGCCTTGGAGGAGGCTGGCATGAAAGAGGCCGTCGACTTGGGTGAAGAGGCCATGGTCATGGCGACTCGGGATTTAGAGGATTCTTCGGATAATAAAAATTACTCACATGGTGGACGTAATAAATCCAACAACAAACACAAAAATAAATCCCGCGGTAAAATCACCTACAACAGTGGCGGACAACCAAGTGGTAGCAACACTAGCAGTGGACAGGCCAACAATGGTGGCGGCAGCACTCGGGGATGGGGACAGCAGGCTCGTCGTGGGCAGTCGAACCAGCAACAGTCTTGGCCTCAACTCCCTCCATGGTGGGCTTGGATGCAACTACCACCGTGGGCCATACCTCCTTGCCCTTACCCCACCAGGCAGGCGGGTATTCTTGGCCCTCGACCACCGAATCAGCAGCCTTGGCACAAGCAGCAGCAGCAAGCATATGCAGCCCCGTGTACGCCTACAGATATTGAGTCTGCCATGCATACTATGTCCCTCTCCCAACCTGATCCGAATTGGTACATGGACACCGGGGCAACGTCTCATATGACTCCATCACAAGGTAATCTCTCGTCTTATTTTAATTTGAGCAAAGAACATGGCATAACTGTTGGTAGTGGTCAATCTATTCCAATTCGTGGTTACGGTCATACTTCTTTTCCCCAAGCCAATACTCCTTTGTCTCTCAAAAATGTCTTGCATGCTCCTAACCTCATAAAGAACTTAGTGTCAGTACGTAAGTTCACTAGTGATAATCATGTGTCTGTGGTTTTTGATCCTTTTGGGTTTTCTGTGCATGACTTACAGACGGGGACACGGCTAATACGATGTGATAGTGCAAGTGATCTTTATCCCATCACCACCAACACATCTACTCCCATCACCTCTCCTTCGGCTCTCTTAGCTTCATCAGTTTGGCATGAGCGTCTGGGTCATCCGGGTGCTTCAGTTTTAGATTACCTTAGGTGTAATAAGTTGATTACCAGTACTTGTACTTCAAAGTCTAGTATTTGTCGCTCTTGTGTACTTGGAAAACATATTAAGTTGCCATTTCCTACTTCATCTTCTACTACATCTATGCCATTTGATATTATTCATAGTGATCTTTGGACTTCTCCTGTGTTGAGTACTTCGGGACACCGCTATTATGTGTTATTTTTGGATGACTACTCAAAATATTTGTGGACATTTCCTATAGCCACAAAATCAGAAGTTGTTTCTATATTCACCAAATTCCAAACCCATATTCGTACTCAATTTGAACGTACTATTAAAAATGTTCAATGTGATAATGGGGGAGAATTTCAAAATAAAATGTTTCGACAATTTTGTGAGTCTAATGGTATCTCTTTTCGTATCTCATGTCCACATACATCATCCCAAAATGGCAAAGCGGAAAGAAAAATTAGGTCTATTAATAATATCATTCGGACTATTCTTCACCATGCTTCGATGCCCCCCTCTTTTTGGCCTCATGCTTTGCAAATGGCAACTTACCTCGTTAATGTGCTTCCAAGTAAGTTATTAGCTTATGCCTCTCCTCTTCAAGTATTATACCAACGCCAACCTTCCTATACTCATCTTAGAGTATTTGGGTGCCTATGTTTCCCGCTTATTCCATCTACTCAAATTAATAAACTTCAAGCCCGTTCTACTCCGTGTGTTTTCTTGGGTTATCCATCGGATCATCGGGGTTATAAGTGTTTTGATATGTCTTCTAATAAAATTACTATCTGTCGGCATGTATTGTTCGATGAGCATGTTTTCCCTTTTGCTCAAGTTCATCGCCCACAAAAGAGTGACTATGATTTTTTAGATGACGGTATTTCTCCTTACACCATTCACCACCTTCAACAATCTGCCAAATGTACTCCTTCCAAACTCATCCTGTCTTCAGCCAAAAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_174227.p1 GENE.S_Transcript_174227~~S_Transcript_174227.p1 ORF type:complete len:844 (+),score=73.21,rve|PF00665.22|7.5e-19,UBN2|PF14223.2|7e-15,gag_pre-integrs|PF13976.2|1e-09,UBN2_3|PF14244.2|2.5e-09,UBN2_2|PF14227.2|6.2e-06 S_Transcript_174227:1183-3714(+)
MSHKPDSSPISKGSSFHPALTVSNIKTHIPLTLAMENVQYANWAELFKVHCRSHKVLHHILPPTTKTSPTTEPTLSPDEQDLWDTLDAIVVQWIYSTISTDLLNTIIEADASALTLWTRLRDLFQDNENSRAIALEQEFNSTYLKDFPSVSAYCQHLKTVSDQLRNVGAPVSNNRLVLRMLAGLTPAFKGVASVIRHRKVLPPFYEARSMLALEEAGMKEAVDLGEEAMVMATRDLEDSSDNKNYSHGGRNKSNNKHKNKSRGKITYNSGGQPSGSNTSSGQANNGGGSTRGWGQQARRGQSNQQQSWPQLPPWWAWMQLPPWAIPPCPYPTRQAGILGPRPPNQQPWHKQQQQAYAAPCTPTDIESAMHTMSLSQPDPNWYMDTGATSHMTPSQGNLSSYFNLSKEHGITVGSGQSIPIRGYGHTSFPQANTPLSLKNVLHAPNLIKNLVSVRKFTSDNHVSVVFDPFGFSVHDLQTGTRLIRCDSASDLYPITTNTSTPITSPSALLASSVWHERLGHPGASVLDYLRCNKLITSTCTSKSSICRSCVLGKHIKLPFPTSSSTTSMPFDIIHSDLWTSPVLSTSGHRYYVLFLDDYSKYLWTFPIATKSEVVSIFTKFQTHIRTQFERTIKNVQCDNGGEFQNKMFRQFCESNGISFRISCPHTSSQNGKAERKIRSINNIIRTILHHASMPPSFWPHALQMATYLVNVLPSKLLAYASPLQVLYQRQPSYTHLRVFGCLCFPLIPSTQINKLQARSTPCVFLGYPSDHRGYKCFDMSSNKITICRHVLFDEHVFPFAQVHRPQKSDYDFLDDGISPYTIHHLQQSAKCTPSKLILSSAKN*

Click here to download the sequence:
Link to NCBI Protein BLAST