Transcript Information: S_Transcript_175193.p1


Annotated TAIR IDAT5G56980.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23056574-23057713 | Reverse length=379
E-Value3.5E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.8920958152905
Replicate 21.1355847566368
Replicate 31.7629085962265
Condition 2: 8 Hour
Replicate 10.78402170283577
Replicate 20.49349666117044
Replicate 30.31346834713208
Condition 3: 24 Hour
Replicate 10.80312071656596
Replicate 20.83322836677748
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_175193.p1 GENE.S_Transcript_175193~~S_Transcript_175193.p1 ORF type:5prime_partial len:136 (-),score=13.83,DUF761|PF05553.7|3.9e-15 S_Transcript_175193:53-460(-)
CCGTCCCGGCCCGTCACGGTGAGGACCCAGCAGAAGCCCCCCGGAGGTGGCGCCGGCGAGTCGCGTGCGGCTGTGGCGGCGACGAAGAAGAAGAAGGTGGTAGAGAAGCGTGATGCGGCGGCGGCGAAAGGCGGTGGTGGGACGGCGTCGTTTGGTGGTAATAGTAAGAGTCTTGAAGAGGATCAGGTGGACACAAAGGCAGATGATTTCATAAACAAGTTCAAGCAGCAGCTCAAGATGCAACGCCTTGAATCCTTGCTGCGTTACAGGAATCCTTGCTGCGTTACAGGAATCCTTGCTGCGTTACAGGAATACTGCCACGTCATCTTCCTAAAACGCACTGTTTTTGGATTCAGTTTCTTCTTTTATTTTCTTAGAGATTTATTTACTACCACTAGACATCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_175193.p1 GENE.S_Transcript_175193~~S_Transcript_175193.p1 ORF type:5prime_partial len:136 (-),score=13.83,DUF761|PF05553.7|3.9e-15 S_Transcript_175193:53-460(-)
PSRPVTVRTQQKPPGGGAGESRAAVAATKKKKVVEKRDAAAAKGGGGTASFGGNSKSLEEDQVDTKADDFINKFKQQLKMQRLESLLRYRNPCCVTGILAALQEYCHVIFLKRTVFGFSFFFYFLRDLFTTTRHQ*

Click here to download the sequence:
Link to NCBI Protein BLAST