Transcript Information: S_Transcript_175194.p1


Annotated TAIR IDAT5G56980.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23056574-23057713 | Reverse length=379
E-Value7.6E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0862449483747
Replicate 23.151827079645
Replicate 32.0701030297919
Condition 2: 8 Hour
Replicate 10.65281807093264
Replicate 20.68485250937939
Replicate 30.87003459612169
Condition 3: 24 Hour
Replicate 11.3374418463629
Replicate 21.3875803005927
Replicate 30.51473560010441


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_175194.p1 GENE.S_Transcript_175194~~S_Transcript_175194.p1 ORF type:5prime_partial len:98 (-),score=20.65,DUF761|PF05553.7|2.1e-15 S_Transcript_175194:127-420(-)
CCGTCCCGGCCCGTCACGGTGAGGACCCAGCAGAAGCCCCCCGGAGGTGGCGCCGGCGAGTCGCGTGCGGCTGTGGCGGCGACGAAGAAGAAGAAGGTGGTAGAGAAGCGTGATGCGGCGGCGGCGAAAGGCGGTGGTGGGACGGCGTCGTTTGGTGGTAATAGTAAGAGTCTTGAAGAGGATCAGGTGGACACAAAGGCAGATGATTTCATAAACAAGTTCAAGCAGCAGCTCAAGATGCAACGCCTTGAATCCTTGCTGCGTTACAGGAATACTGCCACGTCATCTTCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_175194.p1 GENE.S_Transcript_175194~~S_Transcript_175194.p1 ORF type:5prime_partial len:98 (-),score=20.65,DUF761|PF05553.7|2.1e-15 S_Transcript_175194:127-420(-)
PSRPVTVRTQQKPPGGGAGESRAAVAATKKKKVVEKRDAAAAKGGGGTASFGGNSKSLEEDQVDTKADDFINKFKQQLKMQRLESLLRYRNTATSSS*

Click here to download the sequence:
Link to NCBI Protein BLAST