Transcript Information: S_Transcript_17585.p2


Annotated TAIR IDAT5G66810.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26672926-26676450 | Forward length=750
E-Value1E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.2592072798836
Replicate 26.0862867744868
Replicate 35.564618645914
Condition 2: 8 Hour
Replicate 19.9273368717688
Replicate 210.993063555728
Replicate 38.4528361192167
Condition 3: 24 Hour
Replicate 18.4743082506615
Replicate 26.4474636380988
Replicate 34.5660597629952


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_17585.p2 GENE.S_Transcript_17585~~S_Transcript_17585.p2 ORF type:complete len:116 (+),score=19.02 S_Transcript_17585:151-498(+)
ATGGACTCAACCACCCCTGTGAATTGGGAAGCTCTTGACGCTCTCGTCATCCAATTCGCCAAATCCGAAAACCTTATCGAAGACTCTTCTCCTTCATCTTCACCTTCTTCATCTTCTCTCTCCCCTTCACCTTCATCACCATCACCATCTTCATCGTCATCATCGTTGTCTTATCAATCACGATTGTTGATTCGGCAGATCAGACGGCTGTTGGAGTCCGGTGATATTGAATCTGCTTTGGATCTCCTTCGCCTTCACGCTCCTTCCATTCTCGACGATCACCGCCTTCTTTTCTTCCTCCAGAAACAGGTTGCCCTAATTTATACTACTCTCTCATTTTTAATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_17585.p2 GENE.S_Transcript_17585~~S_Transcript_17585.p2 ORF type:complete len:116 (+),score=19.02 S_Transcript_17585:151-498(+)
MDSTTPVNWEALDALVIQFAKSENLIEDSSPSSSPSSSSLSPSPSSPSPSSSSSSLSYQSRLLIRQIRRLLESGDIESALDLLRLHAPSILDDHRLLFFLQKQVALIYTTLSFLI*

Click here to download the sequence:
Link to NCBI Protein BLAST