Transcript Information: S_Transcript_17586.p1


Annotated TAIR IDAT5G66810.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:26672926-26676450 | Forward length=750
E-Value1.1E-278
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.418949918584
Replicate 212.989078922593
Replicate 313.637234428014
Condition 2: 8 Hour
Replicate 117.390705624817
Replicate 218.149556079553
Replicate 316.902566481133
Condition 3: 24 Hour
Replicate 113.753046366613
Replicate 212.80026541143
Replicate 312.575498196354


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_17586.p1 GENE.S_Transcript_17586~~S_Transcript_17586.p1 ORF type:complete len:710 (+),score=158.79,CLTH|PF10607.5|2.1e-11,CLTH|PF10607.5|6.3e+03,CLTH|PF10607.5|1.5e-05 S_Transcript_17586:151-2280(+)
ATGGACTCAACCACCCCTGTGAATTGGGAAGCTCTCGATGCTCTCGTCATCGACTTCACCAAATCCGAAAATCTTATCGATGACTCTTCTCCTCCATCTTCACCTTCTTCATCTTCTCTCTCCCCTTCACCTTCATCACCATCACCATCTTCATCGTCATCATCGTTGTCTTATCAATCACGATTGTTGATTCGGCAGATCAGACGGCTGTTGGAGTCCGGTGATATTGAATCTGCTTTGGATCTCCTTCGCCTTCACGCTCCTTCCATTCTCGACGATCACCGCCTTCTTTTCTTCCTTCAGAAACAGAAATTTATCGAGTTGTTGAGGAGAGGAACAACCGAGGATCGTGATTCTGCTATCGATTGTTTGCGTACCGCCCTTGCTCCTTGCGCTCTCGATGCTTATCCGGAAGCATATGAGGAGTTTAAGCATGTCCTTCTTGCCCTAATATATGACAAAGACGACAACAATTCACCTGTTGCCAGTGAGTGGTCAGAAAGAAGAAGGTTTGACATTGCTGGATTGATGTCCTCCATTTTGAGAGCACATCTTCATGCACATGATCCTCTTTTTTCGATGACATTGAGATATTTAATAAGTATACACAAGGAATTCTGCCTTCGTCAAGGCATCTCCTCTCCCATCTCTGATCTGACCGAAAGATTGCTTCTTGAGGACAAAGATCCTCCAGCAACACCTCAAGAGTCACTTTTTGAAGTTCCCCCATTTGATGAGGTTGACATACAAGCCCTTGCACATGCTGTTCAGCTCACAAGACAAGGGGCAGTTGACAGTTTAAGATTTGCAAAGGGAGACTTATTTCAAGCTTTTCAGAATGAGATATGCCGGATGAGATTGAATATGTCCATTCTAGATGAACTTGTCCGTGAATACTGTGTGTACCGGGGTATAGTTGACCCTGTTACACCATCTTCTGGATCTGGATTGCCGGGGCTAGCTGAGAATTTGAAGGCAAACCGAGCAGACGCTGGTTGTTCATCTGGAAATGGTTCAGTTGACGTTGATTGTGGGAACAGTAAATCTTCAGATGGTGAATCATCCATTAGTAATGCTCATATTGATGGTTCTGAAATCAGTACAGACATGATTCAGTCACGGGATACAGATGTGGAGATGCGTTTTCCCAGTGAGAATGCAATTAATGTTGATGACTGTAGCACCAGTGGAACTCATCAAGCTAAAAGTTTGAGAGTTTGGGAAAGGAACAGAAGTCCTGCAGTTGGAGAAGGGAGAAGACGCAAGAGGTGGAGAGGGCGAAATGATGATTTAGAATATCCAGTTAGTTTACGGTTTGATGGGAGTCGTAGACTAGAGGGTTCTGAAAAGCTTGGCTCTTTAAATCTGATGCATGATAAGGAGGGCAAATGTGAAACTGTTCTGGCCATAAAGGAACTGGCTAGCAGAGGTATGGCGGCTGAGGTTGTTGAAGAAGTAAATTCGTTGGACCCTGTTTTTTTCAAACAGAATTCTGCATTGCTGTTCCAATTGAAGCAGGTTGAGTTCCTAAAGTTGGTGGACTCTGGTGACTATTCTGGTGCTTTGAAGGTTGCATCTTCACATTTGGGGCCTTTGGCAACCACTGATCCAGGCTTACTAAAGCCCTTGAAAGAAACACTAATAACATTACTTAGGCCTACTGACATTGCATTTAAAAGAGACTTGCCTTTGAATGCTCTGGCAAGTTCACTCCAGATTGCGATTGGAAAGAGGCTTGGTATTGAAGAACCCCAGCTTATGAAAGTTATGCAAGCAACCCTTCACACACATAATGAATGGTTTAAACTTCAAATGTGCAAGGATCGCTTTGAATCACTTTTGAAGATCGATTCCTTGAAGGAAGTTAATAGCCTGTTGTTGGCTGATACCATTTCTAAATCGAATACAGATGCTAATGCTCATGGATCTTCTCAAGTTACAATGTCCTCCAGTAGTAGAGCGCCAGAGGATGGTAATAGTCCAACTCAAGTGTCCTCGCAGGAAGCTTACGATGAAGGTGCAATACTCAAAGTCATGGAATTCCTTGCAGTCCCTAGGGCTGATGCGATTCATATGTTGGCACAGTGTAATGGAAATGCCGAAACCGTTATCCAACAAATTTTTGCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_17586.p1 GENE.S_Transcript_17586~~S_Transcript_17586.p1 ORF type:complete len:710 (+),score=158.79,CLTH|PF10607.5|2.1e-11,CLTH|PF10607.5|6.3e+03,CLTH|PF10607.5|1.5e-05 S_Transcript_17586:151-2280(+)
MDSTTPVNWEALDALVIDFTKSENLIDDSSPPSSPSSSSLSPSPSSPSPSSSSSSLSYQSRLLIRQIRRLLESGDIESALDLLRLHAPSILDDHRLLFFLQKQKFIELLRRGTTEDRDSAIDCLRTALAPCALDAYPEAYEEFKHVLLALIYDKDDNNSPVASEWSERRRFDIAGLMSSILRAHLHAHDPLFSMTLRYLISIHKEFCLRQGISSPISDLTERLLLEDKDPPATPQESLFEVPPFDEVDIQALAHAVQLTRQGAVDSLRFAKGDLFQAFQNEICRMRLNMSILDELVREYCVYRGIVDPVTPSSGSGLPGLAENLKANRADAGCSSGNGSVDVDCGNSKSSDGESSISNAHIDGSEISTDMIQSRDTDVEMRFPSENAINVDDCSTSGTHQAKSLRVWERNRSPAVGEGRRRKRWRGRNDDLEYPVSLRFDGSRRLEGSEKLGSLNLMHDKEGKCETVLAIKELASRGMAAEVVEEVNSLDPVFFKQNSALLFQLKQVEFLKLVDSGDYSGALKVASSHLGPLATTDPGLLKPLKETLITLLRPTDIAFKRDLPLNALASSLQIAIGKRLGIEEPQLMKVMQATLHTHNEWFKLQMCKDRFESLLKIDSLKEVNSLLLADTISKSNTDANAHGSSQVTMSSSSRAPEDGNSPTQVSSQEAYDEGAILKVMEFLAVPRADAIHMLAQCNGNAETVIQQIFA*

Click here to download the sequence:
Link to NCBI Protein BLAST