Transcript Information: S_Transcript_176259.p1


Annotated TAIR IDAT4G13650.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:7939611-7942898 | Reverse length=1064
E-Value7.2E-284
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.31494676017965
Replicate 20.58747072786282
Replicate 30.70933600321541
Condition 2: 8 Hour
Replicate 11.0725788029327
Replicate 21.7871003351261
Replicate 31.5450836281717
Condition 3: 24 Hour
Replicate 10.64629832812409
Replicate 20.56994792425726
Replicate 30.89545719781477


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_176259.p1 GENE.S_Transcript_176259~~S_Transcript_176259.p1 ORF type:complete len:676 (+),score=119.48,PPR_2|PF13041.2|0.0093,PPR_2|PF13041.2|0.081,PPR_2|PF13041.2|6.8e-07,PPR_2|PF13041.2|2.1e+03,PPR_2|PF13041.2|1.5e-14,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|6.4e-08,PPR_2|PF13041.2|8.1,PPR_2|PF13041.2|6.5e-11,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|8.3e-13,PPR_2|PF13041.2|9.9,PPR|PF01535.16|19,PPR|PF01535.16|4.2e+02,PPR|PF01535.16|0.02,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|1.8e+02,PPR|PF01535.16|2.3e-07,PPR|PF01535.16|0.0055,PPR|PF01535.16|2.5e-07,PPR|PF01535.16|0.2,PPR|PF01535.16|4.9e-08,PPR|PF01535.16|5.9,PPR|PF01535.16|1.2e-10,PPR|PF01535.16|0.077,PPR|PF01535.16|3.5e+02,PPR_1|PF12854.3|58,PPR_1|PF12854.3|0.0064,PPR_1|PF12854.3|58,PPR_1|PF12854.3|0.00019,PPR_1|PF12854.3|96,PPR_1|PF12854.3|0.39,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|0.87,PPR_1|PF12854.3|0.0058,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|68,PPR_1|PF12854.3|7.2e-05,PPR_1|PF12854.3|3.3e+02,PPR_1|PF12854.3|2.7e+03,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.00039,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|4.8,PPR_3|PF13812.2|0.025,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|0.0058,PPR_3|PF13812.2|18,PPR_3|PF13812.2|1.4e+03 S_Transcript_176259:364-2391(+)
ATGATATCTGGTTTATCTCAGAATGGGCAGGAAGTGGAATCTATTCTCTTATTCTGTGATGAGATGTACAAACATGGTATTTTCCCAACTCCGTATGTTTTGTCAAGCATTTTGAGTGCCTGTAGTAAGAAAGAGTTGTTTGACCTTGGACAGGAGTTTCATGCCCTCATTTTTAAGTGGGGTTTTGCATCCGAGGTATTCGTGTGCAAGGCTCTTGTGACACTTTATACTCGTTGGGGGTATGTGAAGTCTGCCTTGAAAATTTTTGAGAATATGAAATCCAAGGATAGAGTCTCCTATAATTCACTCATCTCAGGACTCGCTCTGCATGGATTTGAAGACCAAGCTCTTTCTTTGATCCAGAAGATGCAGTATGATTTCTTAAAACCAGACTGTGTTACCGTGGCAAGTCTTGTAAGTGCATGTGCATCAATTGGAGCGGTCAATAAGGGAAGACAGCTTCATTCATATGCATCAAAAGCTGGATTCTGTTCAGATATGATCATTGAAGGTTCTTTGCTTGATTTTTATGTCAAATGCTCTGATATCAAAACTGCATATGAATACTTTCTTACAACCAAGAGAGAAAATGTTGTCTTGTGGAATGTGATGATCGTAGCTTATGGTCAGGCAGGGAATCTGCATGAAGCATGTAAGATATTTTTGCAGATGCATAGGAAAGGCTTGGAACCTAATCAATACACATATCCAAGCATGCTGAGAACTTGTACTTCTGTTGAAGCTCTAGATTTGGGAGAACAGATTCATAGCCAAGTCATTAAGACTGGTTTTCAGTTTAACAAGTATGTTTGCATTGTGCTCATCGATATGTATGCTAAGCATGGGCTCCTGGATACTGCTCAGAAGATTTTTAGGAGGCTCACTGAGAATGATATTGTCTCTTGGACAGCTATGATTGCTGGATATGCACAACATGAAATGTATGTCCATGCTCTCAGACTTTTTGAAGAGATGATGTGCCAAGGGATCCAAGCAGATAATATAGGTCTCTCAAGTGCAATCAGCGCATGTGCTGGCATTCAAGCACTCAACCAAGGTCAGCAGATTCATGCCCAATCATGTATCCATCGTTATTCTGATGATCCTTCTATACAAAGTGCTCTAGTGAGTTTGTATGCTAGATCTGGCAGAGTTCAAGATGCTTACTTTGCATTTGAAAAGATGGATGTGAAAGACAATATATCTTGGAATGCACTGATTTCAGGTTTTTCACAAAGTGGGCATTGTGAAGAAGCATTGTGGGTGTACAGTGAGATGAATAAAGCGGGTATAGAAGCTAATTTGTTTACTTACAGCTCCTCAATCAGTGCTGCCTCTAATACAGCAAATGTCAAACAAGGAAAGCAGATACATGCGAAGTTAATCAAAACTGCTTATAATTCGGAAACTGAAGCTTCAAATGCCCTGATCTCACCCTATTCAAAGTGTGGGTGTATTGATGATGCTAAAAGAGAGTTTTCGAGAATGACTGAAAGGAATGAGGTCACCTGGAATGCCATGATAACAGGATATTCTCAACATGGTTGTGGGAGAGAGGCATTGGAGATCTTTGAGGAGATGAAGAAGGTTGGTGTCGCACCAAATGGTGTCACATTTGTGGGGGTATTGACAGCCTGCAGCCACGTGGGGTTAGTGGAAGAGGGGCTAAGCTACTTTGAATCCATGAGCAAAGAGCATGGTTTATTGCCAAAACCAGAACATTACGTTTGTGTGGTAGATATACTTGGACGGGCTGGCTTTCTGACCCTTGCTAGAAAATTTATTGAAGATATACCTATTGAACCAGATGCAATGGTTTGGAGAACACTTTTGAGCACTTGCACTGTCCACAAGAACAAAGAAGTTGGGGAGTTTGCCGCTAATAACTTATTGCAGTTGGAACCTGCAGACTCAGCAACATATGTTCTCATATCAAATATGTATGCAGCGAACAGAAATTGGACCGACAGGGATGTGGCCAGGAAAAATGATGAGAGACAGGGGGGTCAAAAAGGAGCCTGGTCGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_176259.p1 GENE.S_Transcript_176259~~S_Transcript_176259.p1 ORF type:complete len:676 (+),score=119.48,PPR_2|PF13041.2|0.0093,PPR_2|PF13041.2|0.081,PPR_2|PF13041.2|6.8e-07,PPR_2|PF13041.2|2.1e+03,PPR_2|PF13041.2|1.5e-14,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|6.4e-08,PPR_2|PF13041.2|8.1,PPR_2|PF13041.2|6.5e-11,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|8.3e-13,PPR_2|PF13041.2|9.9,PPR|PF01535.16|19,PPR|PF01535.16|4.2e+02,PPR|PF01535.16|0.02,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|1.8e+02,PPR|PF01535.16|2.3e-07,PPR|PF01535.16|0.0055,PPR|PF01535.16|2.5e-07,PPR|PF01535.16|0.2,PPR|PF01535.16|4.9e-08,PPR|PF01535.16|5.9,PPR|PF01535.16|1.2e-10,PPR|PF01535.16|0.077,PPR|PF01535.16|3.5e+02,PPR_1|PF12854.3|58,PPR_1|PF12854.3|0.0064,PPR_1|PF12854.3|58,PPR_1|PF12854.3|0.00019,PPR_1|PF12854.3|96,PPR_1|PF12854.3|0.39,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|0.87,PPR_1|PF12854.3|0.0058,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|68,PPR_1|PF12854.3|7.2e-05,PPR_1|PF12854.3|3.3e+02,PPR_1|PF12854.3|2.7e+03,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.00039,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|4.8,PPR_3|PF13812.2|0.025,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|0.0058,PPR_3|PF13812.2|18,PPR_3|PF13812.2|1.4e+03 S_Transcript_176259:364-2391(+)
MISGLSQNGQEVESILLFCDEMYKHGIFPTPYVLSSILSACSKKELFDLGQEFHALIFKWGFASEVFVCKALVTLYTRWGYVKSALKIFENMKSKDRVSYNSLISGLALHGFEDQALSLIQKMQYDFLKPDCVTVASLVSACASIGAVNKGRQLHSYASKAGFCSDMIIEGSLLDFYVKCSDIKTAYEYFLTTKRENVVLWNVMIVAYGQAGNLHEACKIFLQMHRKGLEPNQYTYPSMLRTCTSVEALDLGEQIHSQVIKTGFQFNKYVCIVLIDMYAKHGLLDTAQKIFRRLTENDIVSWTAMIAGYAQHEMYVHALRLFEEMMCQGIQADNIGLSSAISACAGIQALNQGQQIHAQSCIHRYSDDPSIQSALVSLYARSGRVQDAYFAFEKMDVKDNISWNALISGFSQSGHCEEALWVYSEMNKAGIEANLFTYSSSISAASNTANVKQGKQIHAKLIKTAYNSETEASNALISPYSKCGCIDDAKREFSRMTERNEVTWNAMITGYSQHGCGREALEIFEEMKKVGVAPNGVTFVGVLTACSHVGLVEEGLSYFESMSKEHGLLPKPEHYVCVVDILGRAGFLTLARKFIEDIPIEPDAMVWRTLLSTCTVHKNKEVGEFAANNLLQLEPADSATYVLISNMYAANRNWTDRDVARKNDERQGGQKGAWS*

Click here to download the sequence:
Link to NCBI Protein BLAST