Transcript Information: S_Transcript_176269.p1


Annotated TAIR IDAT2G27900.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:11877654-11885238 | Forward length=1124
E-Value2E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3532034526363
Replicate 21.9943764571765
Replicate 31.9797287321379
Condition 2: 8 Hour
Replicate 14.0964026597883
Replicate 23.15986562708
Replicate 32.7698559034722
Condition 3: 24 Hour
Replicate 12.2215135753147
Replicate 22.176750264395
Replicate 32.4224562422993


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_176269.p1 GENE.S_Transcript_176269~~S_Transcript_176269.p1 ORF type:5prime_partial len:177 (+),score=24.43 S_Transcript_176269:2-532(+)
CAAGATCAACAGAGCAACCAGGGGAAAAAAAAGAAAAACCCCAAATCAATCAAACCAAATTTTTTTCCCCTCAGATCTAATTCTCTCTCCTCTTTCACCAACAGCAACATTCAAACAAAAAACTTCAACCCCAATGAAATTCACAATGATGATGATGATGATGATGATGGCACACTCTCTCTGGTAGATGATATAGATGAAATGCAGCCGGGAACACCATCGCCATTTGGACGATACCTTTTGAGTCCACTCCCTTTCCTTTGCAGCGTCAATGGCGAACTGAATAGTACTAGCGAGGGTTTAGACAGCTCTAGGGTTTTGTTTTTGGCTTCTTTGTGGTTGTTTCAAGGTGGTGGTTCTATGGATTTGTCGAAGGTCGGTGAAAAGATTCTTAGCTCCGTTCGCTCTGCTCGTTCTCTCGGTCTCCTTCCGTCCTCTTCTTCCGATCGTCCTGAGGTTCGTTCGTTCTTTTGTATTCCATTTCGTTTACTTTTGATCGTAGAAAAAAGGAAAAAAAAAATATCTTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_176269.p1 GENE.S_Transcript_176269~~S_Transcript_176269.p1 ORF type:5prime_partial len:177 (+),score=24.43 S_Transcript_176269:2-532(+)
QDQQSNQGKKKKNPKSIKPNFFPLRSNSLSSFTNSNIQTKNFNPNEIHNDDDDDDDGTLSLVDDIDEMQPGTPSPFGRYLLSPLPFLCSVNGELNSTSEGLDSSRVLFLASLWLFQGGGSMDLSKVGEKILSSVRSARSLGLLPSSSSDRPEVRSFFCIPFRLLLIVEKRKKKISF*

Click here to download the sequence:
Link to NCBI Protein BLAST