Transcript Information: S_Transcript_176549.p1


Annotated TAIR IDAT1G31340.1
Annotated Gene Namerelated to ubiquitin 1
Annotated Gene Symbol(s)RUB1, NEDD8, ATRUB1
Annotation TypeOrtholog
Chromosome Positionchr1:11218076-11219417 | Reverse length=156
E-Value4.7E-105
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 184.193858453116
Replicate 271.302924433605
Replicate 365.807035571029
Condition 2: 8 Hour
Replicate 176.189803587575
Replicate 273.827100511098
Replicate 375.186807915752
Condition 3: 24 Hour
Replicate 162.456507798108
Replicate 266.446174848837
Replicate 375.207550589801


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_176549.p1 GENE.S_Transcript_176549~~S_Transcript_176549.p1 ORF type:5prime_partial len:220 (+),score=32.11,ubiquitin|PF00240.19|9.9e-33,ubiquitin|PF00240.19|4.5e-27,Rad60-SLD|PF11976.4|1e-15,Rad60-SLD|PF11976.4|2.5e-14,Ubiquitin_2|PF14560.2|0.00021,Ubiquitin_2|PF14560.2|0.00094,Rad60-SLD_2|PF13881.2|0.076,Rad60-SLD_2|PF13881.2|0.13 S_Transcript_176549:2-661(+)
ATATTCGGGCGCTTTCCCCTAATGTGCCCCACGCAACCCACTTCCACCTCCAAGTATAGTCACTCTCCACTATTGACTAGCATAAGTGTGCATAACTCATTGTTCTTCTGTACTTGTACGCTAACTCATTCCCATTTTCATTTTCATTTTCATTCACTCCTTCCCCAAAAACCCCAACCCAGCTCAACAAATATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACCATAACCCTAGAAGTCGAATCAAGCGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCGGACCAACAACGGCTAATCTTCGCCGGAAAACAGCTCGAAGATGGCCGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACTTTACACCTGGTTTTGAGGCTAAGAGGGGGCACAATGATCAAGGTCAAAACCCTAACTGGAAAGGAGATCGAGATTGATATCGAACCCACTGATACCATTGATCGTATTAAGGAAAGGGTTGAGGAGAAAGAAGGGATTCCACCTGTTCAACAGAGGTTGATTTATGCTGGCAAACAACTTGCTGATGATAAGACTGCTAAGGATTATAATATTGAGGGTGGGTCTGTTCTTCATCTTGTTCTTGCTCTTAGGGGTGGTGCTGGGTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_176549.p1 GENE.S_Transcript_176549~~S_Transcript_176549.p1 ORF type:5prime_partial len:220 (+),score=32.11,ubiquitin|PF00240.19|9.9e-33,ubiquitin|PF00240.19|4.5e-27,Rad60-SLD|PF11976.4|1e-15,Rad60-SLD|PF11976.4|2.5e-14,Ubiquitin_2|PF14560.2|0.00021,Ubiquitin_2|PF14560.2|0.00094,Rad60-SLD_2|PF13881.2|0.076,Rad60-SLD_2|PF13881.2|0.13 S_Transcript_176549:2-661(+)
IFGRFPLMCPTQPTSTSKYSHSPLLTSISVHNSLFFCTCTLTHSHFHFHFHSLLPQKPQPSSTNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGAGF*

Click here to download the sequence:
Link to NCBI Protein BLAST