Transcript Information: S_Transcript_176813.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value1E-72
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.55943245839719
Replicate 27.6192816790216
Replicate 30.33230155105587
Condition 2: 8 Hour
Replicate 10.19212063348768
Replicate 20.94055820106959
Replicate 31.0881964242783
Condition 3: 24 Hour
Replicate 11.1808045130051
Replicate 21.5653683671351
Replicate 30.45445125054263


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_176813.p1 GENE.S_Transcript_176813~~S_Transcript_176813.p1 ORF type:5prime_partial len:333 (+),score=7.28,LRR_8|PF13855.2|22,LRR_8|PF13855.2|2.7e-06,LRR_8|PF13855.2|1.2e+04,LRR_8|PF13855.2|0.09,LRR_8|PF13855.2|7.9e+02,LRR_4|PF12799.3|5.8,LRR_4|PF12799.3|0.00088,LRR_4|PF12799.3|0.013,LRR_4|PF12799.3|2.6 S_Transcript_176813:3-1001(+)
TATCACTCATCACTACCCTTCTCCACATCCCACCCCTACCTACAACAATGGAAAGCCACCGACACCAAACCTTGTTGTTCCTCTCTTTCACTCTCCTCCTCCTTCAATCATCCGTTATCGGAGCTGATCACTGCAACCCGGACGACAAGAAAGCGCTGTTTCAGATCAAGGAAGCCTTCCAGAACGACTACCAGTTTGCGTCCTGGACCAACGACAGCGATTGCTGCTCATGGTACATGCTCAAATGCGACGAGAACACTCACCGTGTCACTGATCTCTTCATTAACAACAGCGACACGGTTTTCTAAGCTCCCTAAACTAACCGGTCCAATCCCTGAATCCCTCACCCGGCTCAAGAATCTCAATTACCTTTGGATCACCTACACCAATATCTCCGGTTCAATTCCTGACTTTATAGGTGACAAGCTCACTAAACTCACTTACATCAATCTCTCAGTTAATAACCTCACCGGTCCAATCCCGCCCTCGCTGTCGAAACTTGAAAGCCTCGGAGCCCTGTTCTTGGACCGGAACCGGCTCACCGGTTCAATCCCGGATAGCTTTGGTGGGTTCATGAATAACCCAGATTTTTACCTCCCGCTCACCAAAAACCAGCTATCTGGGCCGATCCCAGAATCGTTAGGAACCGTTAATTTCACCAACCTTGATCTTTCTCGAAACGGGTTCACCGGAGATGCTCTATTCTTGTTTGGTAAGAACAAGGGTTTGCAATTTGTTGATCTCTCAAGGAACAAATTCTCGTTCAACATGACGAATTTGAAGGTGCCCGAAAGCTTGATAGGGTTTGATGTGAGCCATAATATGATTTATGGGAGCATCCCACCAGCATTTGGGAAGCAAACTTTGAATAATTTTAATGTAAGTTACAACCGGTTGTGTGGACCAGTCCCAACCGGAATTGATTTGGACCGGTTCGACCAGTACGACTTTGCTCATAACAAGTGCTTGTGTGGCTCTCCTTTGCCTCCTTGCACGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_176813.p1 GENE.S_Transcript_176813~~S_Transcript_176813.p1 ORF type:5prime_partial len:333 (+),score=7.28,LRR_8|PF13855.2|22,LRR_8|PF13855.2|2.7e-06,LRR_8|PF13855.2|1.2e+04,LRR_8|PF13855.2|0.09,LRR_8|PF13855.2|7.9e+02,LRR_4|PF12799.3|5.8,LRR_4|PF12799.3|0.00088,LRR_4|PF12799.3|0.013,LRR_4|PF12799.3|2.6 S_Transcript_176813:3-1001(+)
YHSSLPFSTSHPYLQQWKATDTKPCCSSLSLSSSFNHPLSELITATRTTRKRCFRSRKPSRTTTSLRPGPTTAIAAHGTCSNATRTLTVSLISSLTTATRFSKLPKLTGPIPESLTRLKNLNYLWITYTNISGSIPDFIGDKLTKLTYINLSVNNLTGPIPPSLSKLESLGALFLDRNRLTGSIPDSFGGFMNNPDFYLPLTKNQLSGPIPESLGTVNFTNLDLSRNGFTGDALFLFGKNKGLQFVDLSRNKFSFNMTNLKVPESLIGFDVSHNMIYGSIPPAFGKQTLNNFNVSYNRLCGPVPTGIDLDRFDQYDFAHNKCLCGSPLPPCT*

Click here to download the sequence:
Link to NCBI Protein BLAST