Transcript Information: S_Transcript_176962.p1


Annotated TAIR IDAT5G51960.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21110716-21111116 | Forward length=103
E-Value4.2E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.999224328154
Replicate 222.653757134948
Replicate 318.113401510679
Condition 2: 8 Hour
Replicate 131.416869663633
Replicate 225.368078368261
Replicate 324.360968691407
Condition 3: 24 Hour
Replicate 120.479578272432
Replicate 226.1038544049
Replicate 320.267714254111


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_176962.p1 GENE.S_Transcript_176962~~S_Transcript_176962.p1 ORF type:complete len:112 (+),score=24.69,Complex1_LYR|PF05347.11|2.6e-07,Complex1_LYR_1|PF13232.2|2.1e-06,Complex1_LYR_2|PF13233.2|6.1e-06 S_Transcript_176962:201-536(+)
ATGGGTTCAGAAGCTTTGCATGCTGCAAAGGTTTATAGGCAACTCCTGAAATCTGTGAAGAAGCACATTGGACAGGAAGACTACAAACGGCACTTTAGGGATTTTATAACTGAAGAATTTCAAAAGAATCGAGGATTCTCAGATCCATCTTCTTCCATCCAGAATAAACTGAAGCTTGCTCGTGACTATACATTCTTGCTTAACAGCGTGCACCATCAAAAGGAACTACTATTCTCCTATAACATTGCTGTCGATAGATCAGATGAGATGAAAAAGATACTTGGAAAATCTGCTGCAAGCGTGGGACTTCAACTTCCTGAGGCTTATCAGCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_176962.p1 GENE.S_Transcript_176962~~S_Transcript_176962.p1 ORF type:complete len:112 (+),score=24.69,Complex1_LYR|PF05347.11|2.6e-07,Complex1_LYR_1|PF13232.2|2.1e-06,Complex1_LYR_2|PF13233.2|6.1e-06 S_Transcript_176962:201-536(+)
MGSEALHAAKVYRQLLKSVKKHIGQEDYKRHFRDFITEEFQKNRGFSDPSSSIQNKLKLARDYTFLLNSVHHQKELLFSYNIAVDRSDEMKKILGKSAASVGLQLPEAYQP*

Click here to download the sequence:
Link to NCBI Protein BLAST