Transcript Information: S_Transcript_177443.p1


Annotated TAIR IDAT4G33495.1
Annotated Gene NameUbiquitin carboxyl-terminal hydrolase family protein
Annotated Gene Symbol(s)RPD1
Annotation TypeOrtholog
Chromosome Positionchr4:16111349-16112578 | Reverse length=409
E-Value1.1E-211
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3310237556182
Replicate 24.5353914293821
Replicate 34.3836053646246
Condition 2: 8 Hour
Replicate 16.8496971040042
Replicate 27.4732513657331
Replicate 37.5312951923382
Condition 3: 24 Hour
Replicate 14.8180364015657
Replicate 24.6104113485075
Replicate 33.9966408693332


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_177443.p1 GENE.S_Transcript_177443~~S_Transcript_177443.p1 ORF type:complete len:467 (+),score=78.59,PORR|PF11955.4|8.5e-113 S_Transcript_177443:140-1540(+)
ATGAACCCATTCAATTTTTCCAAACCATTTAATCTAACCCTAATTAAATCCACATTACTAAAGAGAAACCCATCAATCTCAACTTTCACAAGACCCATGTCAAGATCAACATCAATACCCAAAAACCAACAAAGGGTAAGAGATCATGGGTATGATAATTACATGGAAATCGAGAAAAAAATCAGAAAAGTTTTGAAATTTGAAGATTTAATTCTCACACAACCTCACCAATGTGTCCCAATCTCACGGCTTGACACTCTAGCTCGTCGTATTGGGTTCAAGCAACATGAATCAGGCAAGTTTGTTCTTAAATTTCCTCATATTTTTGAGATTTATGAGCACCCAGTTCAAAGAATCTTGTATTTAAGGTTAACTAGAAATGCCCTTTTGCAAATTGATCAAGAAAAACATGCCCTTGTTGCCCAAATCCCTGATGCTGTTACTAGGCTTAGGAAACTCTTGATGTTATCGAATACGGGTCGGGTTAAGTTAGAGCATATTAGGATTGCCCGTCGAGAATTCGGATTGCCTGATGATTTTGAATATTCTATTGTGCTAAAGTATCCTCAGTATTTTAGGTTGTTTGATGCAAAAGATGCAAATTGTAAATACATTGAGATTGTGGAAAGAGATCCAAAATTGGGTGCTTGTGCTATTGAGAAAGTTAGGGAGATGGAGTATAGGAGGAAGGGTATTGGTGAAGAGGATGTAAGGTTTTCTTTTGTTGTGAATTTCCCACCTGGGTTTAAGATTGGCAAGTATTATAAGATTGCAATGTGGAAGTGGCAAAGGTTGCCTTATTGGTCACCATATGAGGATGTTTCGGGGTATGATATGCGTTCGCTCGAGGCTCAGAATCGGATGGAGAAGAGGGCGGTGGCAATGATTCATGAATTGCTGTCGTTGACGGTTGAGAAGAAGATTAGTTTGGAGAGGATTGCGCATTTTAGGGTCACTATGGACTTGCCTAAGAAGCTTAAGGATTTCCTGCTCCAGCATCAGGGTATATTTTACATTTCGACTAGGGGTAATCATGGCAAACTTCATACTATATTTCTGAGGGAGGCTTATAGGAAGGGGGAGTTAATAGAGCCTAATGATGTGTATTTGTCTCGTAGAAAATTGGCTGAACTAATCCTGATGAGCCCTAGAAAGGTACCTATGGACAGAGAGTTAGTTAGTTTTAGAATGAATGGGCGTGGTGATGATCATCAACTTCATCATGAAGTGGCTGGGAGCCGAAACGAGTACATCAATGACAGTGAAAATATTAGGGGAAATAGGGTGAGAGATATGAACTCAGACTCAGAGCTTGATAGTGACATGGCTTCAGATTTCAGTGATGAGGATGATGATCCCCGTCATGTTAAGGACTCAAAAGCCGCTAATTTACCTGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_177443.p1 GENE.S_Transcript_177443~~S_Transcript_177443.p1 ORF type:complete len:467 (+),score=78.59,PORR|PF11955.4|8.5e-113 S_Transcript_177443:140-1540(+)
MNPFNFSKPFNLTLIKSTLLKRNPSISTFTRPMSRSTSIPKNQQRVRDHGYDNYMEIEKKIRKVLKFEDLILTQPHQCVPISRLDTLARRIGFKQHESGKFVLKFPHIFEIYEHPVQRILYLRLTRNALLQIDQEKHALVAQIPDAVTRLRKLLMLSNTGRVKLEHIRIARREFGLPDDFEYSIVLKYPQYFRLFDAKDANCKYIEIVERDPKLGACAIEKVREMEYRRKGIGEEDVRFSFVVNFPPGFKIGKYYKIAMWKWQRLPYWSPYEDVSGYDMRSLEAQNRMEKRAVAMIHELLSLTVEKKISLERIAHFRVTMDLPKKLKDFLLQHQGIFYISTRGNHGKLHTIFLREAYRKGELIEPNDVYLSRRKLAELILMSPRKVPMDRELVSFRMNGRGDDHQLHHEVAGSRNEYINDSENIRGNRVRDMNSDSELDSDMASDFSDEDDDPRHVKDSKAANLPE*

Click here to download the sequence:
Link to NCBI Protein BLAST