Transcript Information: S_Transcript_177662.p1


Annotated TAIR IDAT1G25360.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:8894428-8896800 | Forward length=790
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.85109229042398
Replicate 20.78698757339229
Replicate 30.58980459799953
Condition 2: 8 Hour
Replicate 12.7017407166847
Replicate 21.9537530792381
Replicate 32.7267504931341
Condition 3: 24 Hour
Replicate 10.48365055698733
Replicate 20.27876767006577
Replicate 30.55842164734574


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_177662.p1 GENE.S_Transcript_177662~~S_Transcript_177662.p1 ORF type:complete len:813 (+),score=138.65,PPR|PF01535.16|7.3,PPR|PF01535.16|0.0006,PPR|PF01535.16|4.5e-07,PPR|PF01535.16|8.3e+02,PPR|PF01535.16|9.9e+02,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|2e-07,PPR|PF01535.16|17,PPR|PF01535.16|0.00095,PPR|PF01535.16|0.00037,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|2.1,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|1.3,PPR|PF01535.16|0.0003,PPR|PF01535.16|5.6e+03,PPR|PF01535.16|0.83,PPR|PF01535.16|5.4e+03,PPR_2|PF13041.2|35,PPR_2|PF13041.2|0.0013,PPR_2|PF13041.2|7.2e-14,PPR_2|PF13041.2|3.5e+02,PPR_2|PF13041.2|5.3e-05,PPR_2|PF13041.2|3.3e-11,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|1.5e-05,PPR_2|PF13041.2|0.0012,PPR_2|PF13041.2|27,PPR_2|PF13041.2|6.6e-10,PPR_2|PF13041.2|0.03,PPR_2|PF13041.2|0.017,PPR_2|PF13041.2|2e+02,PPR_1|PF12854.3|0.93,PPR_1|PF12854.3|0.00064,PPR_1|PF12854.3|9.5e-05,PPR_1|PF12854.3|6.2,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|2.7e-05,PPR_1|PF12854.3|0.89,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.00044,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|0.53,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|0.0015,PPR_1|PF12854.3|11,PPR_1|PF12854.3|0.00021,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|4.9e+02,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|3.3e+02,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.77,PPR_3|PF13812.2|0.051,PPR_3|PF13812.2|8,PPR_3|PF13812.2|0.76,PPR_3|PF13812.2|0.26,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|7.4e+02,PPR_3|PF13812.2|25,PPR_3|PF13812.2|5.7e+03,DYW_deaminase|PF14432.2|2.1e+03,DYW_deaminase|PF14432.2|7.4e-41,TPR_19|PF14559.2|0.26,TPR_19|PF14559.2|1.4e+04,TPR_19|PF14559.2|2e+03,TPR_19|PF14559.2|6e+02,TPR_19|PF14559.2|26,TPR_19|PF14559.2|2.8e+03,TPR_19|PF14559.2|8.7,TPR_19|PF14559.2|79,TPR_14|PF13428.2|6.1e+02,TPR_14|PF13428.2|9e+02,TPR_14|PF13428.2|3.4e+03,TPR_14|PF13428.2|7.4e+02,TPR_14|PF13428.2|5.3e+02,TPR_14|PF13428.2|3.3e+03,TPR_14|PF13428.2|2.4e+03,TPR_14|PF13428.2|1.5 S_Transcript_177662:173-2611(+)
ATGAGAAATGCAGCTCGTCAAGCCACAAACTTTGCTCATCACAATTTGCCCCATTTAGTTGTAAATGTCCGGGAGGTAGCCAATCGCTATGCTGCTCAGCTCCAACTATGTTGCCCACCGAACCCCAAATCTCAATCCCTTGGCAAGATCATCCATGCCAACATTATTACTTCTGGGTTCAAGCCAAAAGGTCACATCCTTGACCGCCTGATAGACATCTACTGTAAGTCCAAAAATCTCGCGTATGCACACCACCTGTTCGACAAAATTCCTCAACCAGATATTGTGGCAAGCACTACTATGGTCACTGCGTACTGTAATTTGGGGGACATGAAGGAGGCAAGAAAGATTTTTGATGAGGCCCCACTTAGTATACGGGACGTTGTGTGTTATAACGCGATGATTACGGGGTATAATCACAATGGTAATGGTGGCGATGCTGTCGAGTTGTTTCGAGATATGATGTGTAAAGGGATAAGGCCTGATCATTTCACTTACAGTGGTGTTCTTAGTTCGTTGAGCTTGATAGCGGATGATGAAAGGGAGTGTTACCAGCTGCATTGTGCTGTGGTGAAGTCTGGGACAGGGTGCTCCACCTCAGTATTGAATGCACTTATATCTCTATATGTGAAGTGTGCATCTTCACCTTATGCTGCATCTTGTTCTTTGTTATGCGCTGCCCGTGAGCTTTTTGATGTGATGCATAGGAAAGATGAGCTCACATGGACTACTATGATCACAGGGTATGCGAGGAATGAGGATCTTAATTCAGCAAGGGAAATTTTTGATTCAATGAGTGAGAAGCCAGTGGCCGTGTGGAATGCCATGATCTCGGGGTATGTACATCATGATTTATATTCTGAGGCATTGGAACTATTTAGAAGAATGGATATTGAAGGAATTCACCATGATGAGTATACATACACAAATGTCTTAGGTGCCTGTGCTGATGTTGGATTGTTTAGGCTCGGAAAGGAGATGCATGCTCGCATTTTGCGGAAAGAAGTAAAACGCGGACCTGATTTTTTGTCATCTGTAAATAATGCACTTGTCACATTGTATTGCAAAAGTGGCAAAATTCATGAAGCACGTCATATATTTGAACAGATGCCCATAAGGGATGTAGTTTCGTGGAATGCTATATTGTCAGGTTACGTGAATGCTGCACAAATTTTAGAAGCCACAGAATTTTTCAAGAAAATGCCGCAGAAAAATCTTTTGACATGGGCTGTGATGATAGCGGCTTATGCACAGAGTGGACTTGGGGAAGAGGGCCTGAAATTATTGAATCAAATGAGACTGGAAGGATTTCAGCCTTGTGATTATGCATTTGCTGGGGCAGTTACTGCATCTTCAAATCTTGGAGCACTAGATCAGGGGAGGCAGCTCCATGCTCAAATTATCTGCCTTGGATACGAGTCAAGCCTTTCAGCAGCAAATGCTTTAATAACAATGTATGGAAGATGTGGTGTTGTTGAGGCTGCACACTTGATCTTTGTCACAATGCCTTCTCTAGATTCTGTCTCTTGGAATGCCATGATTGCAGCTTTTGGTCAGCATGGGCACGGTGGTCAAGCACTGGAATTTTTTGATCAGATGCTTGAAGTAGGAATACTACCTGATCGGATTACGTTTCTTACTATTCTCACTGCCTGTAGTCACTCTGGGCTGGTTCATGAAGGGCGTCGTCATTTTGATTTGATGCAACTGTACCATATTAGTCCAGGAGAAGACCATTATGCCCGGATGATTGACTTGTTTTGTCGAGCTGGGAAATTCTCTGAAGCCAAAGAACTGATTGATAAAATGCCTTATGAGCCAAAGGCACCAATCTGGGAAGCTTTACTTGCTGGATGCAGGACACATGGAAATTTGGATTTGGGTATTGAGGCTGCAGAAAGACTCTTGGACTTGGTTCCAAAACATGATGGCACCTACATATTGCTGTCGAACATGTATGCCATGGCAGGCCAGTGGGATGGTGTGGCTAAGGTGAGGAAGTTAATGAGAGATAGAGGAGTGAAAAAAGAGCCAGCTTGTAGTTGGATAGATGTCGATAGTAAGGTGCACGTCTTCTTGGTCAATGACACTTCACACCCTGAAGTACAAGCAGTTTATGATTATCTTGAACAGTTGGGACCCAGATTGAGAGAACTTGGGTACGTTCCTGACACTAAGCATGTGTTGCATGATATGGAATCTGAACAGAAAGAGTACAGTTTGTCTACTCACAGTGAGAAGCTAGCAGTTGTGTACGGGCTCCTGAAGCTTCCTGTTGGAGCCACGATTAGGGTATTCAAGAATATTAGGATCTGTGGAGACTGTCATAATGCAATGAAGTACATTTCAAAACTGGAGAAAAGAGAAATTGTAATCAGAGATGGAAAGAGATTCCACCATTTTAGGGATGGTGAATGCTCTTGTGGTGATTATTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_177662.p1 GENE.S_Transcript_177662~~S_Transcript_177662.p1 ORF type:complete len:813 (+),score=138.65,PPR|PF01535.16|7.3,PPR|PF01535.16|0.0006,PPR|PF01535.16|4.5e-07,PPR|PF01535.16|8.3e+02,PPR|PF01535.16|9.9e+02,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|2e-07,PPR|PF01535.16|17,PPR|PF01535.16|0.00095,PPR|PF01535.16|0.00037,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|2.1,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|1.3,PPR|PF01535.16|0.0003,PPR|PF01535.16|5.6e+03,PPR|PF01535.16|0.83,PPR|PF01535.16|5.4e+03,PPR_2|PF13041.2|35,PPR_2|PF13041.2|0.0013,PPR_2|PF13041.2|7.2e-14,PPR_2|PF13041.2|3.5e+02,PPR_2|PF13041.2|5.3e-05,PPR_2|PF13041.2|3.3e-11,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|1.5e-05,PPR_2|PF13041.2|0.0012,PPR_2|PF13041.2|27,PPR_2|PF13041.2|6.6e-10,PPR_2|PF13041.2|0.03,PPR_2|PF13041.2|0.017,PPR_2|PF13041.2|2e+02,PPR_1|PF12854.3|0.93,PPR_1|PF12854.3|0.00064,PPR_1|PF12854.3|9.5e-05,PPR_1|PF12854.3|6.2,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|2.7e-05,PPR_1|PF12854.3|0.89,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.00044,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|0.53,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|0.0015,PPR_1|PF12854.3|11,PPR_1|PF12854.3|0.00021,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|4.9e+02,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|3.3e+02,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.77,PPR_3|PF13812.2|0.051,PPR_3|PF13812.2|8,PPR_3|PF13812.2|0.76,PPR_3|PF13812.2|0.26,PPR_3|PF13812.2|0.29,PPR_3|PF13812.2|7.4e+02,PPR_3|PF13812.2|25,PPR_3|PF13812.2|5.7e+03,DYW_deaminase|PF14432.2|2.1e+03,DYW_deaminase|PF14432.2|7.4e-41,TPR_19|PF14559.2|0.26,TPR_19|PF14559.2|1.4e+04,TPR_19|PF14559.2|2e+03,TPR_19|PF14559.2|6e+02,TPR_19|PF14559.2|26,TPR_19|PF14559.2|2.8e+03,TPR_19|PF14559.2|8.7,TPR_19|PF14559.2|79,TPR_14|PF13428.2|6.1e+02,TPR_14|PF13428.2|9e+02,TPR_14|PF13428.2|3.4e+03,TPR_14|PF13428.2|7.4e+02,TPR_14|PF13428.2|5.3e+02,TPR_14|PF13428.2|3.3e+03,TPR_14|PF13428.2|2.4e+03,TPR_14|PF13428.2|1.5 S_Transcript_177662:173-2611(+)
MRNAARQATNFAHHNLPHLVVNVREVANRYAAQLQLCCPPNPKSQSLGKIIHANIITSGFKPKGHILDRLIDIYCKSKNLAYAHHLFDKIPQPDIVASTTMVTAYCNLGDMKEARKIFDEAPLSIRDVVCYNAMITGYNHNGNGGDAVELFRDMMCKGIRPDHFTYSGVLSSLSLIADDERECYQLHCAVVKSGTGCSTSVLNALISLYVKCASSPYAASCSLLCAARELFDVMHRKDELTWTTMITGYARNEDLNSAREIFDSMSEKPVAVWNAMISGYVHHDLYSEALELFRRMDIEGIHHDEYTYTNVLGACADVGLFRLGKEMHARILRKEVKRGPDFLSSVNNALVTLYCKSGKIHEARHIFEQMPIRDVVSWNAILSGYVNAAQILEATEFFKKMPQKNLLTWAVMIAAYAQSGLGEEGLKLLNQMRLEGFQPCDYAFAGAVTASSNLGALDQGRQLHAQIICLGYESSLSAANALITMYGRCGVVEAAHLIFVTMPSLDSVSWNAMIAAFGQHGHGGQALEFFDQMLEVGILPDRITFLTILTACSHSGLVHEGRRHFDLMQLYHISPGEDHYARMIDLFCRAGKFSEAKELIDKMPYEPKAPIWEALLAGCRTHGNLDLGIEAAERLLDLVPKHDGTYILLSNMYAMAGQWDGVAKVRKLMRDRGVKKEPACSWIDVDSKVHVFLVNDTSHPEVQAVYDYLEQLGPRLRELGYVPDTKHVLHDMESEQKEYSLSTHSEKLAVVYGLLKLPVGATIRVFKNIRICGDCHNAMKYISKLEKREIVIRDGKRFHHFRDGECSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST